Array 1 461-2409 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJRE01000005.1 Streptococcus sp. GMD4S Contig_005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 461 36 100.0 30 .................................... CCATTGTTGAGGACGAAGTGTTCAATCAAG 527 36 100.0 30 .................................... TTCCACAACTGAGTAACCGATAAAAAAGCA 593 36 100.0 30 .................................... AGTTCTTGACTGTGATATTTGCTCCTGAAC 659 36 100.0 30 .................................... CTCGTTCCCATTAGATGTTTCAAACACCTT 725 36 100.0 30 .................................... AACATTGATATTTCAACCTTTCTAAGCATT 791 36 100.0 30 .................................... ATCACCCCTTTCATGGTGTAAAATAGGGTA 857 36 100.0 30 .................................... CGCCCGCTGGGAAGAAGACCCACGCATCAT 923 36 100.0 30 .................................... CCCAGTCATAATTATCCCAACCAAAAACTC 989 36 100.0 30 .................................... CATTATCAAATAATCTTAGTCAGATTGAAC 1055 36 100.0 30 .................................... AACTTCGTGCTAAAGGTTACATCAAGGGTA 1121 36 100.0 30 .................................... CTGTTTCAGACGATGGAGATATTTCAACAG 1187 36 100.0 30 .................................... TTCTATTTCTATAATCATTATAACACAATT 1253 36 100.0 30 .................................... TAACAGGTTTACTTGATGGATTGGCGCTGG 1319 36 100.0 30 .................................... AAAGCCCCATCTTTACTCACCTCCTTTCTA 1385 36 100.0 29 .................................... AGAGTATCATACGAGCCTTGGGATCAAAA 1450 36 100.0 30 .................................... TAGCCCGTCACTTTATTATATCAAACGCAC 1516 36 100.0 30 .................................... CTTTTGCTAGCTTGTACGATATTTCACTAA 1582 36 100.0 30 .................................... CCATCATCAGAATAAGTAAAATCCTGAAAG 1648 36 100.0 29 .................................... ACTGAAAAAGCTGTCAAGCTTACTGCTCC 1713 36 100.0 30 .................................... GATAAGCTCATCCACATTGTTAAAACTTCC 1779 36 100.0 30 .................................... CTAAAGCATGGTACGGGGATAAGTTTTCTG 1845 36 100.0 30 .................................... AACGCATTAGATTTCTGGAAGATGAACTGT 1911 36 100.0 30 .................................... CATATTCCTATCATTTAGAAGTTAAACGTA 1977 36 100.0 30 .................................... GAGAACATCGTGGAGGAAGGAGAATAACAT 2043 36 100.0 30 .................................... TTAAGGGCGCTGGTATGACACCAGAGATAA 2109 36 100.0 30 .................................... AATGTGTCAACTCATTCACAAGCGGGATAC 2175 36 100.0 30 .................................... TGAAGGATGATGGCAAATGGTACTACCTAA 2241 36 100.0 30 .................................... GGTTTTTAAATTGTACTTTTCCATAAAGAC 2307 36 100.0 31 .................................... AAGCGATATAGATAATGCTGAGCAGATCAGG 2374 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 30 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GAGAAAATGGAGTTTCTGACTAATCATAATGATTCATTATATATTGTTTTGTTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCGCTAGAATTCATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTCTATCTGTAGAAGATCAAGTGGCATTAAAAATTTTGAATAATTTGTATCAATATGAAATGAAAAAAAAATTCTGTATTGGATCAATCAATCCTATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATGTTTTTGAGGGAACAAAAATCAAAATTGACGAATTTGAGG # Right flank : TTTTGGTAAAAAGCACTCTGAAGAAACAAAGTTTTTGTACTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 726-30 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJRE01000549.1 Streptococcus sp. GMD4S Contig_549, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 725 36 100.0 30 .................................... AAATCAGCAGTCTAACAATTAAGTTTCTTA 659 36 100.0 30 .................................... TGTTTCCATAAAATTCTCTTTGTTCTGGCC 593 36 100.0 30 .................................... TACAACAAGACAAAGGACGTAGGGACATTG 527 36 100.0 30 .................................... TAACACGAGAGTTAAATAATTGCTTTGGTT 461 36 100.0 30 .................................... TGGTGACACTACAATCAGCAGATGGGTCAC 395 36 100.0 30 .................................... GTCCTTGTGAAACAGCTCCATCAGCAGCTT 329 36 100.0 30 .................................... ATAAAACCGTTACAATTCCATCTGCAATAA 263 36 100.0 30 .................................... ATCGATGAAAGACTGGCTCAGCTTGCGTCT 197 36 100.0 30 .................................... ATGACCGTTTTAATTGGGCGATGGACATTG 131 36 100.0 30 .................................... TTGGTCCTCAATTGGCTGAACTGGAAATGC 65 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : | # Right flank : CTAAATCCTGCGAAGCCTATAATCGACCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [26.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //