Array 1 164199-162523 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXEC010000006.1 Escherichia coli strain ME2L-18-84 NODE_6_length_253987_cov_15.466623, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 164198 29 96.6 32 ............C................ ATGCTGACGCTCGAGCGCGACGGTAAAACAAT 164137 29 93.1 32 ............C...............T TAACAATATCCTGCCACTTTTCGTCAGAATCC 164076 29 96.6 32 ............C................ TTGGTGAGGTCCAGCCCAGGAGCGAGAGCGTT 164015 29 96.6 32 ............C................ TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 163954 29 93.1 32 ............C...............C ACAACATCAGGATTGCGATCCGTAGCGTTACC 163893 29 93.1 32 ............C...............T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 163832 29 96.6 32 ............C................ GCGGACGGCAAAACAATCGGGAGTCTGGATAA 163771 29 96.6 32 ............C................ ATTTTTACTGAAATGACGGCTCGATTTACAGC 163710 29 96.6 32 ............C................ CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 163649 29 96.6 32 ............C................ GTTAAAAACCATTTACGGAGATAATAAATAAC 163588 29 96.6 32 ............C................ TGAACACACTTCCAAAATTCAACGGTGACGCC 163527 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 163466 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 163405 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 163344 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 163283 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 163222 29 100.0 32 ............................. CCACCTTTAAGCGCCATACCATTTCACATATG 163161 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 163100 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 163039 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 162978 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 162917 29 100.0 32 ............................. GAAGATATTTCTGGCGTTGGCCTGCGCGTGAC 162856 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 162795 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 162734 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 162673 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 162612 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 162551 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ================================ ================== 28 29 97.9 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180580-179697 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXEC010000006.1 Escherichia coli strain ME2L-18-84 NODE_6_length_253987_cov_15.466623, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180579 29 100.0 32 ............................. TATATCAAGATGAGCAAATTGTAAATGAGCGT 180518 29 100.0 32 ............................. CGAGGATCGGCTCATGCTCAATCGCCTGGCTG 180457 29 100.0 32 ............................. TCGCTGGCGGGGACCGATCATATCTGTCAATC 180396 29 100.0 32 ............................. CGTTGACCGCCATCAAAAATGGTACAACCTCG 180335 29 100.0 32 ............................. CGACCGCGTGGGCGTCTACGTGGGGGATCAGA 180274 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 180213 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 180152 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 180091 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 180030 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 179969 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 179908 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 179847 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 179786 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 179725 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //