Array 1 3242005-3241377 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059958.1 Pectobacterium brasiliense strain IPO:4065 NAK:223 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3242004 28 96.4 32 .................T.......... CGGCGCTGAAAGCCTATAAAGGACGCCAGAGC 3241944 28 96.4 32 .................T.......... TTGACTGGACGCAGCGAATTAAAGAAGACGGT 3241884 28 96.4 32 .................T.......... CGCCGCGAAATGTCACCAACATAAACCATAAC 3241824 28 100.0 32 ............................ AATGGAAAATTGCTGCGATGTCGGCCATCACC 3241764 28 100.0 32 ............................ TGATTAGAAAACGTCTGTACCATCTGGAAAAA 3241704 28 100.0 32 ............................ ATACAGAAAGGCTTCATTAGCCGGCCGCTGTT 3241644 28 92.9 32 .......A...C................ AGCAGTTGTAGAGAGCTGGAGGGTGGTTGCAT 3241584 28 96.4 32 ...........C................ TGCCACCGGACCAGATGAAGGGGACCGACAGT 3241524 28 92.9 32 ........T..C................ CGTGGGGTGCCACTTTGTTTGATGCTCCAGAC 3241464 28 92.9 32 ...............A....T....... AGGGCGCGTGGGTGCGACTGGAAGATAAAGAG 3241404 28 78.6 0 ............GC........C..TGC | ========== ====== ====== ====== ============================ ================================ ================== 11 28 94.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GAGGCGCTCTCTACGTTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGAATGTAAAACCGTACCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCAGAACGGCTACGTCGACGCTCGGTGAACAAAGGCTGGCTGACGGAGGCGGAGGCCGCAGCACGAATTCCTGATGCGGTGGAAAAACGTAGCGCACTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGTCAGATGTTCTTCGTGTTTGTGGAACATGGCCCGCTACAGGATGCACCTATCGCCGGACGCTTTTCCTCCTACGGCCTAAGTGCAGAAGCCACCGTACCCTGGTTCTGACCCTTTTTTGGCGACCAACTGCAAGCTATTGATTTTTAATTGCGGTTGGTCGCTCTAATAAAAAAGGGTTTTCCGACAAAAAAGTCGCATTCTCTTTAACAATCTGGTGGTTAGCGTAAAAACTTAAC # Right flank : TTGTCGGGATGCGTCGCTGGTGCGACGCATTTTGGAGGCTTATTCCCCGTGGAGGGTGACAACCAGCGAGCGATTGCCGCCGTGATTGCGGTGCTCGCACAGGTAGATGCCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTGGTGATGGGGAGCGTTAGACTGTTACCCAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGCTCATCCTCCGGCACTAAGCGATTAAAAAAACTCTCGAAATCCTGCCGCACCGTAGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACCTGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGCATCCACATCGCAGTCCCCTGCTATCAGGCTTCACGTGCCAGAATCGGCC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTATAGGTAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3250951-3252000 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059958.1 Pectobacterium brasiliense strain IPO:4065 NAK:223 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3250951 28 100.0 32 ............................ CTTGCCTGACGGGTTGCGGCACGCACTCGAAA 3251011 28 100.0 32 ............................ GTCTGCTGCAAACAGACTGGCAAACATACCCG 3251071 28 100.0 32 ............................ AGTCATAATACCCATGCGGAGCAGAGGAATTT 3251131 28 100.0 32 ............................ AGCGCTCGTTCCATCTCATCAATCGCCGGGTC 3251191 28 100.0 32 ............................ ATGAGCATGACATACACCCGCAAATCGGCGAA 3251251 28 100.0 32 ............................ TGAGAAATACTTCACTGAGGTTGAAGGTATGG 3251311 28 100.0 32 ............................ ACGCATATAGTCTTTCTGCGTGAGTGGGAAAA 3251371 28 100.0 32 ............................ GTGAAAAAGTCGGTTTTCGTCTGGCTGATACT 3251431 28 100.0 32 ............................ TACCTGAGGATTGTCAGTCCGAAATCCGGTAT 3251491 28 100.0 32 ............................ AGGAGCAGTGATACCAGTTATCAATGAAGGAT 3251551 28 100.0 33 ............................ AGCCTGGCCAGCATTCAACTTGAAAAAACGGAT 3251612 28 96.4 32 ...........C................ TGGAATAAATACGTCGCCGATGCCAACTTTAC 3251672 28 96.4 32 ...........C................ ACGCCAGGCAACTAGCGCAACTTCCACCTGAT 3251732 28 96.4 32 ...........C................ ATGTTGAGGGCGTGCAACGCGTTGATTTGGAA 3251792 28 96.4 32 ...........C................ TCCTTTTCCTGATCCTTTCGTTCATCGCGTGA 3251852 28 96.4 33 ...........C................ GATATGCCGATGATCCGATTTAAAACGATTAGT 3251913 28 96.4 32 ...........C................ ACAGGCTCTTTCGCCGCCCTGTCATAAGCCGC 3251973 28 82.1 0 .............C......T...TCC. | ========== ====== ====== ====== ============================ ================================= ================== 18 28 97.8 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TGCGTGACGGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAAGCGCAGGCTAATTATTTGATAAGAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAATAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : ACGCCTTAAGTGTCATTATCTGGCTATTATCGAGGTAGCACTATCGGCAGAGTTTGATACGTTATCGTCTTTAAATAACGTATTTTTGATTCCCCTTTCTCGTAACATTTTTAAGTAACGGGTTTCTTTGTGGGGAATGGAAAATTGCGGATTGGGCATTATTAACATTTAAAAACCATCATTTTTCCGTTAAAGTGCCTTTACAGGGAAATAGTGCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATACGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTACAGACGTTATGCACCCCAAATCCCAATCAATCGTGGAAAACGGCCATATTTGGCTGTACCGATCCTGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3258853-3258344 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP059958.1 Pectobacterium brasiliense strain IPO:4065 NAK:223 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3258852 28 100.0 32 ............................ TGGTGCCGCCATGTTTTGAGCGGACCATACCG 3258792 28 100.0 32 ............................ CGACACATCCGCCACACGCCCGTCGGCGCTGC 3258732 28 100.0 32 ............................ ACACGCTGTGCGCGTTGATTGCGCAGCACTGG 3258672 28 100.0 32 ............................ GTAATACTGGGATCGGATTTCGTAAACAAAAT 3258612 28 100.0 32 ............................ CTACCGCGCCCTTGAAACGCTGCGTCGTATTC 3258552 28 100.0 32 ............................ GTTCACCATATTTCCCTGCTAATGAAATCCGT 3258492 28 96.4 32 ................A........... TGAACTAGTAATGGCGACAAAACAGATAGTCT 3258432 28 96.4 33 ...........C................ ATCGATATTAATGTCTACATATTCGCGGAATGA 3258371 28 89.3 0 .............C......T.A..... | ========== ====== ====== ====== ============================ ================================= ================== 9 28 98.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTGACGTTCTGTCATAAAGTCGGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGCTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCTCCTCCTCCTTAAAAAATACAGAAATTCAGCCAGCGACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGGTTGTATATCCATAGCATATGCAGATACCTGACATAGGCCTATCGTCAATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAATTTAGACTATCAGCTCTGATAAAAAATGGTTCTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : ATAAAGCTCTCCTAAGGTCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCACTGGAACAGGCACAGCTGATTCTCGGCTATCATGCCCGTCTGTCGCCGAACGCCGTCGGGCTGGAATGTCTGGGGTTGATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGCCAAATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //