Array 1 656-2077 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABAKM010000021.1 Neisseria meningitidis strain 101075 NODE_21_length_46529_cov_43.729221, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 656 36 97.2 30 ........G........................... TTCCCATCTTACTCTCCCCTTGCCACTCAA 722 36 100.0 30 .................................... CTCAACATTGTTGTAATCTGACCGCAACGC 788 36 100.0 30 .................................... ACAATGTTTCGGCGCAACACATCAGCAGGG 854 36 100.0 30 .................................... AAATTTAAAAACTTCAAAATTAAATACAAG 920 36 100.0 30 .................................... AAGGGGGGTCAGGGGGGTCGGAAAAAATAC 986 36 100.0 30 .................................... ATCAAAAACGCTCAATATAAAAAATCAAAA 1052 36 100.0 30 .................................... AATTTACCAAAACAAACCAATACCATGCAC 1118 36 100.0 30 .................................... AATCGCCTCGAGCCATACGGAATCAAGCTC 1184 36 100.0 30 .................................... CCAGCCTACAAACCCTACAATCGCAATCAA 1250 36 100.0 30 .................................... AACCGTCTGCACCGTAAATGTAATCAACTT 1316 36 100.0 30 .................................... TATCTTTCTCGCCAAACCAACCGTTGTAGG 1382 36 100.0 30 .................................... ATGTTTTTGGCGAGATGGTCGTATGTATCG 1448 36 100.0 30 .................................... CGCCCTAGTTAGTTATGCAATCGGTAGGTC 1514 36 100.0 30 .................................... GCTTGTTTTTTTGCTCCGCATTTTTTCCGA 1580 36 100.0 30 .................................... AAACTTGGCGGCTTCAGGATGGCGGACGAC 1646 36 100.0 30 .................................... CTATTTTTGTTTATCGGTTATTCAGCTCAA 1712 36 100.0 30 .................................... CTTTTCAATGTTAAACATTTTGTATAAAAA 1778 36 100.0 30 .................................... TCAACCTGCCGCTGACCCGCGCCGTTGCCG 1844 36 100.0 30 .................................... AAGAGCAGGGCGATTATGGTTGATTTCTTC 1910 36 100.0 30 .................................... CATATACGGCCACTTGAGAGGAAGTGATGC 1976 36 100.0 30 .................................... TAAAAACTGCTTATACCCAACTTTCTTTTC 2042 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 22 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAACCGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGGAGGTGCTCATGGAAAATCCCCTAAATGGCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //