Array 1 980875-982367 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023317.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain L-4681 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 980875 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 980936 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 980997 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 981058 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 981119 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 981180 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 981241 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 981302 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 981363 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 981424 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 981485 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 981546 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 981607 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 981668 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 981729 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 981790 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 981852 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 981913 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 981974 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 982035 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 982096 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 982157 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 982218 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 982279 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 982340 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 998499-1000402 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023317.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain L-4681 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 998499 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 998560 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 998621 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 998682 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 998743 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 998804 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 998865 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 998927 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 998988 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 999049 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 999110 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 999171 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 999232 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 999293 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 999354 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 999415 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 999476 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 999537 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 999598 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 999659 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 999721 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 999824 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 999885 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 999946 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 1000007 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 1000068 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 1000129 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1000190 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1000251 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1000312 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1000373 29 96.6 0 A............................ | A [1000399] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //