Array 1 931258-932140 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012349.1 Salmonella enterica subsp. enterica serovar Sloterdijk str. ATCC 15791 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 931258 29 100.0 32 ............................. CGTGTCACAGGAGTGAACGAAATCAAGGGTCT 931319 29 100.0 32 ............................. ACCAGACATGATGGTTCCCCCTCGATACACTG 931380 29 100.0 32 ............................. CAACTGAGGAGCTCTGTTCTCGCGGCGCAGTC 931441 29 100.0 32 ............................. GAGGGGTTATGAAGGATGACGCGATAACGGAG 931502 29 100.0 32 ............................. GATTTTTCTAATTTGTGGGATGAATGGAAAAA 931563 29 100.0 32 ............................. GTGCCAGATATTGCTGACGCACCCAACCCATA 931624 29 100.0 32 ............................. ACAACCGCCGTTTTCTCCACGATGTAGAGAAA 931685 29 100.0 32 ............................. TTCATATTCCAGAAAACGCCTGGGTGATGATC 931746 29 100.0 32 ............................. GGGCCGAGTTTATTCAGCGTGTACAGGAAATG 931807 29 100.0 32 ............................. GCAGATCTAACGCCTGGCAATGATGGGATATA 931868 29 100.0 32 ............................. TTCGCGCCAGATTTTGGCGAGGTGATACAGGT 931929 29 100.0 33 ............................. TATCGAAACCGCCAGCGCGCGAATGAATGCATG 931991 29 100.0 32 ............................. CGCATAGCAGAACTGGAGGCGCGGACGGTGAA 932052 29 100.0 32 ............................. CGAGATGTCTCTGTCACTGGCTTTAATCCAGC 932113 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGTCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCCGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 948250-949561 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP012349.1 Salmonella enterica subsp. enterica serovar Sloterdijk str. ATCC 15791 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 948250 29 100.0 32 ............................. CAGGCGGATGTCGTGAAAAAACTCAACGACGC 948311 29 100.0 32 ............................. TGCTCAACTGGGGGGTGATCATTAACGCCGTG 948372 29 100.0 32 ............................. GCAAAACCACGTGGCCGCGACGGGGTAAATAA 948433 29 100.0 32 ............................. GTAGTGAAAGTCCCGTAACTCCTAACCGCGCC 948494 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTGAAC 948555 29 100.0 32 ............................. GTAGGCGTGGAGCCTTGTCACTGGCCGTAAAC 948616 29 100.0 32 ............................. TGCATTGCGTCTTCCGTGTCGGACAGGTTGTG 948677 29 100.0 32 ............................. CAATGGGGAATAAGTGGCGGGTAAATCAACTT 948738 29 100.0 32 ............................. CCCTTATAACCATCACCGCGTCCAACTGGAAA 948799 29 100.0 32 ............................. ACGCAGATCGCCGCCCGTATCGATGCCAACGA 948860 29 100.0 32 ............................. GCAAATTTCGACAGTGAGCAGGCTATTTCAGC 948921 29 100.0 32 ............................. CTGGCGAACTGGTAGACGGTGAGCCGCTATTA 948982 29 100.0 32 ............................. GCAATTAATAACAGAAAATAAATAGCGAGGAA 949043 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 949105 29 100.0 32 ............................. TGAAATCCATCCGCTACGAACCTGAAGAAAAA 949166 29 100.0 32 ............................. GGCCAGTAATAAAAGAGGTGGTAGTAACGATG 949227 29 100.0 32 ............................. CCGAGTTCGCGCAGTGTTTCTGTGCAGGTATT 949288 29 100.0 32 ............................. ACCGCAATAAAAATTTACACCGCCACACCGGC 949349 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 949410 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 949471 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 949532 29 100.0 0 ............................. | A [949559] ========== ====== ====== ====== ============================= ================================= ================== 22 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGTCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCATTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //