Array 1 465571-470658 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP024609.1 Shewanella algae strain ATCC 49138 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 465571 29 100.0 32 ............................. CCCATGCCGGGGTAGACAACATGGCGGCTACC 465632 28 96.6 33 .....-....................... AGGCTCATCTTTGCCTGCAAATCTTCGGCGAAC 465693 29 100.0 32 ............................. GCATGGGGGCTTGGCTGGTCATGGAGTTGGGT 465754 28 96.6 32 .....-....................... GCGGTTGTATAGAGTCTAGTTAAATGAACAAT 465814 28 96.6 32 .....-....................... TGCTCACTTTACTAGGCCAAACCAGCGACATC 465874 29 100.0 32 ............................. TCGTCGTCAGCTGGAGGCGAACTTGCCGAGCT 465935 29 100.0 32 ............................. CATACTTTGGTACCGCTTCACGAACAGCTCAT 465996 29 100.0 32 ............................. GCGTGGTGCCTGTGACTTTGATGGAGTCACCA 466057 29 100.0 32 ............................. GCATGGCTCAATGATTAAATCTGCTACTGTCA 466118 29 100.0 32 ............................. TTCGACGGCGAGCTCTGCCAGTTCCTTGAGTG 466179 29 100.0 32 ............................. CGCTATGGCTGGCCTCGCGTGACTCAACCGCC 466240 29 100.0 32 ............................. GTTCTTTGATGACCTGCTCGACTTGGTTGAAT 466301 29 100.0 31 ............................. GCTAGAGAGCAGGGTGAGAAATATTTTCTAC 466361 28 96.6 32 .....-....................... TTTGTTAGCAAGCATATTGTAAATGGTCTTTG 466421 29 100.0 31 ............................. CCGAGCCGCTTGCTTATCTGGGATCGGTTGA 466481 29 100.0 32 ............................. GCATTTCACCTCGCGGGTTTCGCCGTCATCCA 466542 29 100.0 32 ............................. CAGGCGATTAGCGCCGTCTTTCATGTAATCTA 466603 28 96.6 32 .....-....................... CCCATCCACAATTCCCAGAAACCTCATCAGTG 466663 29 96.6 33 ............................T GACGTAGGCATCCAATTGGGTGTCTTCGTGTTG 466725 28 96.6 32 .....-....................... TCGTACTTGGCGCAAACGCTCGAAACAATGGT 466785 29 100.0 32 ............................. CGCGCATAGATGGAGCCAACCCTAGTGTGATT 466846 29 100.0 32 ............................. GCCAGGCGACAGGTAGTGCGCTGGAATCATCA 466907 29 100.0 32 ............................. CCGACTTTCTCTCCCTTGATTGCAAATTTCCA 466968 29 100.0 32 ............................. CTGTTTCAGCGACCCACGCTTGACGGCGTTCA G [466989] 467030 28 96.6 32 .....-....................... ATATGACGCGCGAATGGCGCCGAATCAAATGT A [467048] 467091 29 100.0 32 ............................. GTGTGTTCGCCGACCTTGCTGCCACAGTGAAC 467152 29 100.0 31 ............................. GTAGAACCGAATATCTTTTTAGCGGCTACCG 467212 28 96.6 32 .....-....................... ACCCCGAGAACGAAAATGGCCTGATATTTGAG 467272 29 100.0 32 ............................. CTCGGCGACAGCGTGCCATCCGTTAGGCCTTT 467333 28 96.6 32 .....-....................... GCTTGGCGTGATTGTGTAATTGACCTGAATCC 467393 29 100.0 32 ............................. CATGGACAAAGATCATTGCGCGTAATCGTCAA 467454 29 100.0 32 ............................. TACCGCCGCATTATGGCGATGTTTGACGAGTC 467515 29 100.0 32 ............................. TCGGAAAAAAGCAAAACTCATCATCAGTAGGT 467576 29 100.0 32 ............................. CCGATTTTCTATTGCAATATGTGGAGGCGACT 467637 29 100.0 32 ............................. GCGCGATTGTGTGCGAGTCGTGCCCTGTAGGA 467698 29 100.0 32 ............................. CGAATCGCCTGTTTAGCTTTTATCGCCGGCTA 467759 29 100.0 32 ............................. TGAATCTTCTTCTTGTCCACCTGATGGTTTTC 467820 29 100.0 32 ............................. GCCATAACGTCTACGGCAGTGAAAACCTCGAA 467881 29 100.0 32 ............................. TTGATGGTGTTAGCTGGGCTGTTTCTGATTGC 467942 29 100.0 32 ............................. CCGTGGCATTTGACGATGAAGGGCTTCCAAGC 468003 29 100.0 32 ............................. TATATCAACATTAATTTTGATGTCAACATTTA 468064 29 100.0 32 ............................. TTTGACGACCTGTTCACTGTTGGCCAAAACGT 468125 29 100.0 32 ............................. GATTTACAGCTGTTAGTTACAAAGTTGCAAAT 468186 29 100.0 32 ............................. GCGCTCAGTCAATGCTTGACTCTGCCGTTATG 468247 29 100.0 32 ............................. CCACAAATCAAGCTGCGCCACAGCGACAAGGG 468308 29 100.0 32 ............................. CGTTGGCGCTGGCGCTGGTGGTTGGCGCTCTA 468369 29 100.0 32 ............................. GCGACCCGATTAGCGTGGTCAAAGGCTCAAGA 468430 29 100.0 32 ............................. ACGAGTGCGAAGCGGCCAAAGACTTCGGCGAG 468491 29 100.0 32 ............................. ATACTTAAACTTTCGCAGTTTAAAACTATCGA 468552 29 100.0 32 ............................. CACAAATGCCCCTGCTAAATATTTCATACAAA 468613 29 100.0 32 ............................. GTGCCGGACTCGAGGTAAAAGCCGATCTCCCG 468674 29 100.0 32 ............................. CAACAGTTCAAAGCGCTTTTCCGATTCTCTGC 468735 29 100.0 32 ............................. AGGAATTTAATCATGCAATTCAAACTGACATT 468796 29 100.0 32 ............................. CGTTTAAACACCTTAAACAATGAAAACTTATT 468857 29 100.0 32 ............................. CGTTGGTTCAGGTCGAAATTGACCGTGTTGCA 468918 29 100.0 32 ............................. CATTGATAGCTGTATCTCTGTTTTTAACTCTA 468979 29 100.0 32 ............................. TAACCGAATTCTGGTCAACGCTCAATACTGAG 469040 29 100.0 32 ............................. TAAAATGATAGCAATATGCTTGCCTGGTTAGA 469101 29 100.0 32 ............................. GATTGAGCCTGGCCTTAATGTCATTCGGCGTA 469162 29 100.0 32 ............................. CAAACGCTTTCAGAGTACGATTTAGGTTCTTA 469223 29 100.0 32 ............................. CCAAAGCGCCTCCCATGGGGGCTTCCCCCACC 469284 29 100.0 32 ............................. GTGGCTGTCTGAGGTTCTTGATGTTACTCGTC 469345 29 100.0 32 ............................. CCTTTGCTGCTCATCCCTATCCAGGGCGATGA 469406 29 100.0 32 ............................. AGGTCCATGTCACTGATGTGTTTCCGTTGGCC 469467 29 100.0 32 ............................. ACAGGACGGGGGTTTTCTGGCGCTCGGCTCAG 469528 29 100.0 32 ............................. ATTGTCAAACCTAACATAAAGACCCCTTATAG 469589 29 100.0 33 ............................. CAACGCCCTCAAGGCTCTGGCCATCAACTTTCA 469651 29 100.0 32 ............................. TTCTCGGCGCTTTGCCGCGGGCGAATAATCAA 469712 29 100.0 33 ............................. TTGACGTTTGCGCGGGTGGTTGTGGCGGTTAGC 469774 29 100.0 33 ............................. TGATGCGATCGGCGTAGGCATTCCGTTGGGTAA 469836 29 100.0 32 ............................. CGCTATACCGCCGGAGACTCAGTATTTTCTGG 469897 29 100.0 32 ............................. GCCAACAACCTGCGCGCCTTTGTCGCGCTCCT 469958 29 100.0 32 ............................. CCTTTGCTGGCCTTAATAGATTCTCTGCTTCC 470019 29 100.0 32 ............................. GACTTGCGGTATATCGACATCAAGAGATATGA 470080 29 100.0 32 ............................. TCGCATTAGACCACTTACAACTGACAACCCCT 470141 29 100.0 32 ............................. GAGTGAGGTGGATATGGAAAAGCTCGCGTTGA 470202 29 100.0 32 ............................. TCGGTTGACGCCACGGCTTGACCGTTGTTGAT 470263 29 100.0 32 ............................. CTACGTTCATTGCACAATATGGTGAAAGTGTA 470324 29 100.0 32 ............................. ACTTTCAAGCCAAGGTAAATCCTTCAACTCGC 470385 29 96.6 32 ............................T CCAGCGAGAGCAATGGCTGGCTGAAAACGTCC 470446 29 100.0 32 ............................. CGCATAGCCGCAGAAACAGCCGGAGCAATAGC 470507 29 96.6 32 ................T............ GGCGGCTCCAGTCATTCGGGACGGCGAACGCT 470568 29 100.0 33 ............................. TATGTAATGAGCTACCCACTCATTGAATGGGGG 470630 29 93.1 0 ..........................GT. | ========== ====== ====== ====== ============================= ================================= ================== 84 29 99.4 32 GAGTTCCCCGCACCCACGGGGATAAACCG # Left flank : AGGTACTGGCAGCCGGTGAAATTGAGCCGCCTCCAACTCCAAAGGATGCCCAGCCCATTGCTATACCAGAGCCGAAACCGTTGGGAGAACAAGGACACAGGAGCCAGTAACTATGAGTCTGTTGGTTGTGGTGACCGAAAATGTACCGCCTCGCTTACGTGGTCGTTTGGCCATCTGGTTACTGGAGGTGCGTGCCGGGGTTTATGTGGGTGACACCTCCCGCAAGGTGAGGGAAATGATTTGGTATCAAATCAGTGAATTGGCAGAGGAAGGCAATGTGGTGATGGCCTGGGCCACCAATACAGAATCAGGATTTGAATTTCAAACCTTGGGTGAGAATCGTCGTATGCCGGTGGATTTGGATGGTCTGCGACTGGTCTCATTTTATCCAACTGAAAAATAACAAAATATTGCTCTTTAACAACTTGGAATAATAGCCTAAAAAGTTGGTGAATATTTTTAAGTGAAAAATCGCTTAAAAAACAATAGTATTTACCAGA # Right flank : GTATTTCTTTACTGTACAACCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGAGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCGGCTCTGGGTGGGCGCCATTCCAGGGTTTGTCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGCTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGAGAGCGGATAAGCGGGGCCGAGTAGCTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCCAGAAGGCAAACACCTCCTGGTGGTGAATTGCCGAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCACCCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //