Array 1 504057-505549 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPLK01000001.1 Salmonella sp. S071_01786 NODE_1_length_684246_cov_189.184, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 504057 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 504118 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 504179 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 504240 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 504301 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 504362 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 504423 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 504484 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 504545 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 504606 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 504667 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 504728 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 504789 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 504850 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 504911 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 504972 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 505034 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 505095 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 505156 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 505217 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 505278 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 505339 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 505400 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 505461 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 505522 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 521681-523584 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPLK01000001.1 Salmonella sp. S071_01786 NODE_1_length_684246_cov_189.184, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 521681 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 521742 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 521803 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 521864 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 521925 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 521986 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 522047 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 522109 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 522170 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 522231 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 522292 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 522353 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 522414 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 522475 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 522536 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 522597 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 522658 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 522719 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 522780 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 522841 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 522903 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 523006 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 523067 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 523128 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 523189 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 523250 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 523311 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 523372 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 523433 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 523494 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 523555 29 96.6 0 A............................ | A [523581] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //