Array 1 214904-212372 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIW01000004.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_25 contig0003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 214903 29 100.0 32 ............................. GAATTCGTTATTTTTAAACGAAATCATTATCA 214842 29 100.0 32 ............................. AATGCAACTGCAGTATCCTTACGCCCAAAAGC 214781 29 100.0 32 ............................. GCAGCTATCGATGAGATGAATAACGCGATTTA 214720 29 100.0 32 ............................. TACACACCTAGCAATTAATTACGATTTTGTTT 214659 29 100.0 32 ............................. GAGGGTCGGTGCGCGGTATTAAAACACGCTAT 214598 29 100.0 32 ............................. TACACCAAATGGGGGCCAGCAAAGAAAATGCT 214537 29 100.0 32 ............................. TCGTTTATAGCTGAGAACAAGCTGGCGCTGAT 214476 29 100.0 32 ............................. CGCTGGCGCAACGAGTCGTACCTGTACGCCAG 214415 29 100.0 32 ............................. ATTCGACGCTCAGGCCGTTCTCTTTTAACCGG 214354 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 214293 29 100.0 32 ............................. CAGTTTGAAGAGCGCGCCCGACAGGAATATGA 214232 29 100.0 32 ............................. TTACAGACCGCTCATTTGTTATAAATATGTTG 214171 29 100.0 32 ............................. CCTGGAATGGTTTAACGGTGCAATCCAGGATA 214110 29 100.0 32 ............................. CTGGCTAATCTGCGTGTTGATGTTGTCCATGC 214049 29 100.0 32 ............................. GTCCCTACAACCGGGACCGCCCGCCCGACCAG 213988 29 100.0 32 ............................. CCGAACGCTCAACGGGGAGTGATCGAGAATCT 213927 29 100.0 32 ............................. CGATCAGGAAATCAAGGAGAAGCGGGTGCGTA 213866 29 100.0 32 ............................. ATGGAGCGCGGTGGTTACATCGGCGTTCCGGA 213805 29 100.0 32 ............................. GTCGGGATCTCGACCTTTTCAATTTCTTCTAT 213744 29 100.0 32 ............................. TTTGCGACATTTATATTAATGATTATAAATAT 213683 29 100.0 32 ............................. ACTTGCTTCATTGACATGCCTGCCACTGCTCC 213622 29 100.0 32 ............................. GCGCGCCATTGCTGAGGGTAAACCGGCGATTA 213561 29 100.0 32 ............................. CCAGCTCAATTTCGCCAACCTTCGCGCTAATG 213500 29 100.0 32 ............................. TCCGTCTCCGCCAACGCCTTTAGCCCATCCAG 213439 29 100.0 32 ............................. CTCTTTGATCTCTCCGTTTGCCGTTGAGTGGT 213378 29 100.0 32 ............................. TTGACCGGACTCGCGGTTATTCAACTAACCGT 213317 29 100.0 32 ............................. TAGAATAATTGTGTTTTTGCTACCAATGGTTG 213256 29 100.0 32 ............................. AATCTTCAGAGGACTCAGATCCTGATTACGTT 213195 29 100.0 32 ............................. CAGGCATAACTACACCTGTCAGGAGCCAATTA 213134 29 100.0 32 ............................. TGGTTACGTATACGCCAGATTCAGAAAAGGCC 213073 29 100.0 32 ............................. ATTCAAAAATTCAATATGAGGTTGGAAATTTT 213012 29 100.0 32 ............................. GTTGTGTGGGTACAGCCGGCCAGCGTCAGCAG 212951 29 100.0 32 ............................. TACGAATAAACAGATTTTTGCGATATCTCTGC 212890 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 212829 29 100.0 32 ............................. TTTACCTGGTTCGTCTGGTTCAACTATATCGA 212768 29 100.0 32 ............................. ATCGAATGCTTTTGTGTGTTCTGCTGCCACTT 212707 29 100.0 32 ............................. GGGGCGTCACCATTTTTGAATTTATCAGCCGC 212646 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGACAG 212585 29 100.0 32 ............................. AGCAATGATTGAAAAGCTGGCGATAAACAAGG 212524 29 100.0 33 ............................. ATAAATCTAATTTATTTGATTAGTAGTGCTAAA 212462 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 212401 29 96.6 0 ............T................ | A [212374] ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGCACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 232653-231527 **** Predicted by CRISPRDetect 2.4 *** >NZ_LWIW01000004.1 Salmonella enterica subsp. enterica serovar Tennessee strain MOD1_SALC_25 contig0003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 232652 29 100.0 32 ............................. CGCTACGAACTCTGGCAGAAGAGAGCGTTTAT 232591 29 100.0 32 ............................. AACGCTACCACCCGGCAGTAAAAGAGCCGACG 232530 29 100.0 32 ............................. CAGAACAGGAGCACGTTAGCCGCGTTGCTGAA 232469 29 100.0 32 ............................. GCATTCTTTCAAACGTTACTTCTGCTCGCGCC 232408 29 100.0 32 ............................. CGAGTCAACAGCGGTAGCCATTGCAGGCATTT 232347 29 100.0 32 ............................. GTTTGCCGTATCTTCGATCATACCGGAACGGT 232286 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAG 232225 29 100.0 32 ............................. CCACGACTAACCGGTACTAATCCTGAGTTCAT 232164 29 100.0 32 ............................. TATGAGTTTTCAACATCACCAACTAGTCATGT 232103 29 100.0 32 ............................. GCCAAACAGGTTGAGATAGGGCTTCATTATGA 232042 29 100.0 32 ............................. ATGGAACAGGCCCAGGCTGCGCAGCAGCAACA 231981 29 100.0 32 ............................. TCAATAAAATCAATGATAAGCAGTGTCGTTAA 231920 29 100.0 32 ............................. AGAATCGCCAGCGGAAAGAGAAGGGGTTAGCG 231859 29 100.0 32 ............................. CGGGAGCACGGGTGTTGCAGCATTGCAGGAAG 231798 29 100.0 32 ............................. TGCGGCGCGGTAGTTGGCCTACATGATAGCCA 231737 29 100.0 32 ............................. GATGATCGTTTTTTTCGTTACGTCGCGCAAAT 231676 29 100.0 32 ............................. CACCTCAGATGTTTGGGGTGCAATTTGTAATG 231615 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 231554 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCACCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAACCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //