Array 1 778653-782648 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017195.1 Lactococcus paracarnosus strain TMW 21615 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 778653 28 100.0 35 ............................ TGCAAATAAACATGCTATAAAATTTGTAATCATGA 778716 28 100.0 33 ............................ TCGTGATGCTGAGTTAGCAATTGGTACATTAAC 778777 28 100.0 33 ............................ TTGGTAGCCATTAGATGAATCAATAACTAGATT 778838 28 100.0 33 ............................ TTCTATGCCTGCAAGCTTAACCGTCAATGCCGA 778899 28 100.0 33 ............................ CCTAAAGCTCAAAACTGATGAAGCTGAGAGTGG 778960 28 100.0 33 ............................ TCAACTGACCGATGCTAACACGGCATTAGGCTC 779021 28 100.0 33 ............................ TAGCTTAAAAGGCATAAACACTGCAATGAGTGC 779082 28 100.0 33 ............................ TTGCTTCAGGCAATGCATTATCCATAACTGCTA 779143 28 100.0 33 ............................ TGGGCAAGCTGTCAATATGTTTTCAGCCTTAGA 779204 27 96.4 33 .....................-...... CAGTAATAAAGTAACGCTAAAAAACTATTTTTG 779264 28 100.0 33 ............................ TGTCAAAAATATATTTAGCATCGTTATTCACGA 779325 28 100.0 34 ............................ TTAGGTTGTTTTGTCTCGTTAAGTAGCTCAAGAT 779387 28 100.0 33 ............................ TACTGATACTCAATATATGAGCGGAAGTGCAAA 779448 28 100.0 33 ............................ TAATTCGTGTCCCCCTCTTTTACAATGCCAGAC 779509 28 100.0 33 ............................ AATCGTCTGAGTAGTGCATCGCATCAGGCAAGC 779570 28 100.0 33 ............................ TTAAGTGGTTCAGCAGTACAATCAAATGTAGCT 779631 28 100.0 33 ............................ TTATCAATTCTTACAATCGTACCAGCAGGCAGT 779692 28 100.0 33 ............................ TCGTACAAGTTAGTGGGTCTGTGTAATCAAGAA 779753 28 100.0 33 ............................ TCGTACAAGTTAGTGGGTCTGTGTAATCAAGAA 779814 28 100.0 33 ............................ TACTGGCCAAACTCATGTAGTTCAGTACGGTGA 779875 28 100.0 33 ............................ TCCTCAACTTCAGACAGTCCGGCTTTTGTTTGT 779936 28 100.0 33 ............................ CAAGCGAGTATGTTTGATATAAACAAAACTATT 779997 28 100.0 33 ............................ TCTCGTATAAGATTTGTTTTTAGGATTAAGTTG 780058 28 100.0 33 ............................ CTTCTTTTACTGACCACCCATACCGTTTCCAAG 780119 28 100.0 33 ............................ CATCACCTCCATATTCTTGATAGTCCTTAATTG 780180 28 100.0 33 ............................ CGATTATGTAGTCATCTATCTTAGATCCACTTT 780241 28 100.0 33 ............................ TCACACAAGTTATCTTTGAAGCAACAAGCGCAA 780302 28 100.0 33 ............................ TGATAGGGGTATAGGGATAGTCATGACTACTGT 780363 28 100.0 33 ............................ CACTTACTTGCCGAGTATATCAATCTGGCGCTG 780424 28 100.0 33 ............................ CTACTCAAACTTATGATGCAACAGCTCAGACGT 780485 28 100.0 33 ............................ TTACCGAATGAAGCTTGTTCAATTGATGCATCA 780546 28 100.0 33 ............................ TACCAGGATTATCTAGCCGCCAGTAGTTTATAC 780607 28 100.0 33 ............................ CTCGCAAAGTTTTAAAGCGGTTATCATTGACCA 780668 28 100.0 33 ............................ TTTCTTCATACTGTTTAGCATGTTCTTCAATAA 780729 28 100.0 33 ............................ ATAGTAATCAATATTGCTTCAACAATCGGTACA 780790 28 100.0 33 ............................ TGGCCAGCAAGCTACACAGAAACAGTCAAGTCC 780851 28 100.0 33 ............................ CAACAACCATTACTTCAACTACTAATACCGACG 780912 28 100.0 33 ............................ TGATTGCCTGTTGGCGTTCTTCCTCAGATAACT 780973 28 100.0 33 ............................ TCCTTTTTCATACAGCCAACTATCTCCATAATT 781034 28 100.0 33 ............................ TATATTGAAGAAAGGAGTAAAAATGAGAAGCAA 781095 28 100.0 33 ............................ TCGCAGACTAGCCATTTTAGTATCAAACACTTG 781156 28 100.0 34 ............................ TGACGACCTGGCAAACTTAACAGCTAGTTTAAAG 781218 28 100.0 33 ............................ TACTAAACACTCTCCTGTTTCTCTATTCACAGG 781279 28 100.0 33 ............................ CAGACCTTCAACTGCATCTTTTACTTTTTCGTT 781340 28 100.0 33 ............................ CGCTATTTTATCCATCACGACTAGCCAACTTCC 781401 28 100.0 33 ............................ TCAACTGGACTCGTGCTTCTGAACTCGGAGATA 781462 28 100.0 33 ............................ CTGACATCTATTCTAAAAGGCAGATTGAGGTAT 781523 28 100.0 33 ............................ TTGATAATGTACAATATGCAATTGACCACAATA 781584 28 100.0 33 ............................ CGCTACTGGCGTAATCGACCCAATAACTGGACT 781645 28 100.0 33 ............................ TAAATCGTTTCCCCAGTCCCGTTCCCGCCAAGT 781706 28 100.0 33 ............................ TATGACGGAGGACAGGACAAATGAGTAAATCAG 781767 28 100.0 33 ............................ TACATTACCAAATGTCAGCTTTTTAGGTTCTGA 781828 28 100.0 33 ............................ TTCATCACGACAGGCGGTAACACTTACACAAGA 781889 28 100.0 33 ............................ TAACAGTTGTTTGGTCATTGGTTTCTTGAACAA 781950 28 100.0 33 ............................ TGACCCCATCGGTTATGAAACCGACCCCGATGC 782011 28 100.0 33 ............................ TGAAACAATGTACACGTTGGGTGGTATTAGCTG 782072 28 100.0 33 ............................ CGTGATGCTACTTCATTTGAGGAATTATTTGAA 782133 28 100.0 33 ............................ TATACTTACTATCGCCGTCAGCGAAACTGACGT 782194 28 100.0 33 ............................ TGTGCGAGCTTGAATCACACTAAAAGCAAGATA 782255 28 100.0 33 ............................ TTAAATTACAAATTCATCCGATTTGATTTCCTT 782316 28 100.0 33 ............................ CGAAGCATTCGTGCCGTCAGACTTAGTGACTAG 782377 28 100.0 33 ............................ TCAGGATAGTCTGCTATGGTTGTGACTTTTCCA 782438 28 100.0 33 ............................ CGAACTTAAAAAGCATGCATACGCATCTATCAA 782499 28 100.0 33 ............................ TGGTTGATTTGGATGATTGGAAAGTTGTTATAC 782560 28 100.0 33 ............................ TAGCAACCTAAAAATCAAAATGAAATTAACCGT 782621 28 71.4 0 .....G...A..T..A.....AAT...G | ========== ====== ====== ====== ============================ =================================== ================== 66 28 99.5 33 CTTTTACCCGCACCTGCGGGGGTGATCC # Left flank : CTGAAAACAGATAAAATAATTGAAATTGGTGCTGTGAAAGTTAATGGGGAGAAGGTATCAGAGTTTCAGACATTTATAAAAATTGATAAAACTTTGCCTGAGTCTATTATAAATCTGACAGGTATAACTGATAAACTTCTATTAGAAAATGGTCAAGATTTAAAGATTGCTATTGAAGAGTTTAAGGACTTTATAAATGATAGCCCTTTGGTGGGCTATAACGTTGATTTTGATAGAAATTTTATTCAGAGTATTACTAAGGAAGTAGGTATCTCTCCGTTTGAAAATAAATTTATAGATTTGATGAGATCTGTTAAAAAAGAAAAAATGTTTTTAGTAAACTATAAGTTACAAACTGTTTTAAAAGCTTATGATATATTAGATACGGTACCTCATAGAGCTTTGGAAGATTCAAAATTAACGGCTGAATTAGCTACAAAAGTGAATGGATTTTTAGAAAGTATATCAAACTAATGCTGAAATACTTGGGATTTTTAAGT # Right flank : GTATAAAGCATTGATTTTCAATCCTTAACCCTCCTGCGTACACTATATAACTGCCTTATTAGGAACGCATGTATTTTAAAATGTAAAGTATTTTATTAACAAAGTTATGTTGAGTATAAAATACTAGATAATAAAAAGACTGATATCCCCACCAGGCCTATCAGTCCTTTTTTATTCCCCAAAATTCTGTTAAACTATAGAAAGTGATGAAAAAATAACGGAGAAAAAATAATTAATGAGTATTTTAACAGTACAAAAACTAAGTCATGGCTTTGGCGATCGTGCGATTTTTGATGATGTGAACTTTCGCTTGCTTAAAGGGGAACATATCGGCTTTGTGGGAGCAAATGGCGAAGGGAAATCGACCTTCATGAATATTATCACGGGTGCTTTACAGCCTGATGAAGGTAAAATCACTTGGTCGACCAAGCATCGTGTGGGGTATATGGATCAGCATGCTGCACTAGGTAAGGGCAAGACAACCCGCCAATCGCTTTCTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTACCCGCACCTGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched ATTTTACCCGCACGAGCGGGGGTGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //