Array 1 219853-220672 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOGG01000009.1 Salmonella enterica subsp. enterica serovar Newport str. JS09102 contig009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 219853 29 100.0 32 ............................. CCATGATCCTGCTTATCGATAACTATGATTCC 219914 29 100.0 32 ............................. GCTCGCGCGCAGTACGAACAGGCGCACCGGGA 219975 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 220036 29 100.0 32 ............................. CGTTGTCGTTGCTGGACAGAACTCCGGGGACG 220097 29 100.0 32 ............................. GATCGCTCATGATTGATCGAGCTGGTGGCCAC 220158 29 100.0 32 ............................. ACCAGGCTACCCGCGCGGTAGTTCGTCGGCAG 220219 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 220280 29 100.0 32 ............................. CTCCCCCGCCTGATAATTACGCCATCTGCAAT 220341 29 100.0 32 ............................. TCGATATAGCAACTTTTTTAACTATTGCGTGG 220402 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 220463 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 220524 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 220585 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 220645 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTTGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGACAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 237219-238407 **** Predicted by CRISPRDetect 2.4 *** >NZ_AOGG01000009.1 Salmonella enterica subsp. enterica serovar Newport str. JS09102 contig009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 237219 29 100.0 32 ............................. CGTCTGCGCGTAACGCTGCGCGGCGTGGATCG 237280 29 100.0 32 ............................. TGCTCACTAACGAGCGCCAGCAGGTGACGCTC 237341 29 100.0 32 ............................. AATTCTGACTGTGATGATGCCGGAACGCTGAT 237402 29 100.0 32 ............................. GGTCGTCGAAACCACTTGTTATGACCGGCATT 237463 29 100.0 32 ............................. GGAGTGTTTCAGCGCCGATGCAACGAAAAGTC 237524 29 100.0 32 ............................. CTGCCGCTTCTTTTCTCTATACAGATCTTAAA 237585 29 100.0 32 ............................. TTAACTCCACCGTATCGCCAACCAGTAATTCT 237646 29 100.0 32 ............................. ACCAAAATCCTGATCCCACGTTACGGCCCACA 237707 29 100.0 32 ............................. ATTTAAATGACGTGCAGGAATACTGGATTCAC 237768 29 100.0 32 ............................. AAACGCTCCCTCACCGAGCAGCGGCAAACATA 237829 29 96.6 32 .............T............... AGTTCAACCGATTTTTTACACGGCGTTCGCAC 237890 29 96.6 32 .............T............... ACCGAAAAAGAGCTCGAAGTGCTGGCGGCAAA 237951 29 96.6 32 .............T............... CGTTGGATGACCTGCTCCTGGATACGTGGCAA 238012 29 93.1 32 .............T...........T... GCAAAACCACGTGGCCGCGACGGGGTAAATAA 238073 29 96.6 32 .............T............... CCGACATCAACAGCATGGCCTACGTGTGTAAC 238134 29 96.6 32 .............T............... GCGCGGGAACGTGGGATGATGCCAGGACCATC 238195 29 96.6 32 .............T............... CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 238256 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 238317 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 238378 29 93.1 0 A...........T................ | A [238404] ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGAGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //