Array 1 122877-120860 **** Predicted by CRISPRDetect 2.4 *** >NZ_LGLV01000009.1 Pararhizobium polonicum strain F5.1 contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 122876 36 77.8 30 A....C........ATA.CC.T.............. GAGGGACGACATCGTCTGCCCGATCATCGC 122810 36 100.0 30 .................................... CGGATCCGCCGCGACCTTTTTGCCGCGTGC 122744 36 100.0 30 .................................... AACGCCCAGAACCTTTTGTTGTCATTCGCC 122678 36 100.0 30 .................................... CCTCAGAGGAACAGTAACCGAGTCGACTTA 122612 36 100.0 30 .................................... AGAACGGAACAGGCCTTACCGGCCCGTCGT 122546 36 97.2 30 .....A.............................. GCCACACGACCATATACTGGTGTGCGGCAT 122480 36 100.0 30 .................................... CACCTGGAGCATGACAAGACCGTCCTGAAC 122414 36 100.0 30 .................................... ACCCTGAAGGGCTTCGGCAAGCAGATGCAG 122348 36 100.0 30 .................................... GGACCGAGATGCAGTTCTGGCGATCTTTTC 122282 36 100.0 30 .................................... AACCCGGAACACGCCTACGAGGCGTACTTC 122216 36 100.0 30 .................................... CTCTACGGTGGCATGGTTGCTGCACGGCTT 122150 36 100.0 30 .................................... CGGTGGATGTTCATTCCTCTTGAGCGCCGG 122084 36 100.0 30 .................................... ACATGGCGCGCACAACAACTGCAGGTTTTC 122018 36 100.0 30 .................................... CGCTTGCCGCCAGCAAACGAGCCTTCACCC 121952 36 100.0 30 .................................... TATTGGGGAAAATATATCCGGGCGATCTTG 121886 36 100.0 30 .................................... GATCTGGCTGGCGTTCTTGCTGATGCGTTC 121820 36 100.0 30 .................................... GATCTGGCTGGCGTTCTTGCTGATGCGTTC 121754 36 100.0 30 .................................... CTCCCATCCAAACAGGTTCGGGGGAAAGTA 121688 36 100.0 30 .................................... ATAAACACATCACGGGTTGCTTTGCCTTCA 121622 36 100.0 30 .................................... ACGCTCACGGAGCCTACCCTGCTCATCTCC 121556 36 100.0 30 .................................... AGAACCTTGAAAGCAAATGGCGTCGCCACG 121490 36 100.0 30 .................................... AGATGTAGCGCGGCGCATGGTGCGCTATCT 121424 36 100.0 30 .................................... GAAGCTATTCGATGAGATGATGAGCAAGGC 121358 36 100.0 30 .................................... GTACGGAAAAACGTCCTCGTCATCCAAAGA 121292 36 100.0 31 .................................... CATTCGTCGTCTTTCAAGACGCCGCCGCCGG 121225 36 100.0 30 .................................... CGCCAAGCATCTGCACCTCGGTGGACGATC 121159 36 100.0 30 .................................... TTCTGGCTTGTTCAAGCCGTTTGGCGGCGT 121093 36 100.0 30 .................................... CGCACGGGTGGTCATGACGGGTGGCCGCTT 121027 36 100.0 30 .................................... CAAGGACGGTGGTGATCGCACTGATGACCA 120961 36 100.0 30 .................................... GGGAAGCTCTCCGTTCATGGGCAGTAGCTA 120895 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.2 30 GTTGCGGCTGGACCGCGTTTTCTGATCTGCTAAGCT # Left flank : ACAGAAAATACCCCGCGCTTGGCCACGGTTTCGGCCTTGGCATCGGCACCAGCGCGCAAGGCTGGATAACCGATGCGACCGAATTCTGGGAACAGTCAAGGGAGCCCCGCAGCACTCCCCCGTGAGCACAGGTGCCGTTACGAGGCAGCCGGGCCGACCACATCATATTTTCACAACGAGAGGATCACCAATAGCCAGCGCGAGTTTAATCGCGTACCTCGCCTACATGTCGAAGACTGGACCGCGGCGGCACCGTGAATTGATCACGACAGCCAGTCACGATGCGCCTGAACGAATTCAACCCCACGACCGCGCAGATCGCAGCTTCTGCAGATCATTGAAAATCCTAGCATTCAACGCTCCAGCTCACTTTCGATCAATCTTCAACATCGAGCCAGCCCGGCAAGGCGCTGGACGTCGCCAGCCATTTTGCAACTCTCAGGAGTCGACGCGGTGTGGAGCATATCGCGGGCTCGGCAGCACTCCTTCAAGATCGGCGC # Right flank : CGATCCTCGGTTAATCTTCTGATTTCAAAGGAAGATTGGCCGGGGTGACGGCAGCGGAAATGGCGGCTGGCGCTAGAAAAGCGCCAGTTGGTCGGGATTTTTCTTCCGCCGTTTTCTGGCTTGGTCTGAAAAACGGATGATATTTTCGTATTGCCGGTCGGTGAACTGGAAGATGTATATGTCACCCCATTCCGGCAGGATGCTCTCGATCTGACGGGCATAGCTTTCAAACTGCTCCTTGCCGCTGCAAAAGCGAAGATAGTTGGAAAGCTGGCTCATTTCAAAGCCTATGTCGAGCAGCCGCTGCCGGAATCTCGTGGCTGCATAACGCTGCGTCTTGGTTTCGACCGGAAGATCGAATGTCACGAGCATCCACATGATTCTATACCCGCTCAAATGTCGTGGCCCGCTATTGGCCTTGTGAAGAGCCGCCGTCATGCCTCTTCCTGCTCCACGGGCTGTTTTCCGAGCGCCGCCAGATGCAAGGCCGATGGCGGGAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGGCTGGACCGCGTTTTCTGATCTGCTAAGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGCGGCTGGACCGCGTTTTCTGATCTGCTAAGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.50,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.42,4.5 Confidence: MEDIUM] # Array family : II-C [Matched known repeat from this family], //