Array 1 1133725-1131366 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAECWF010000001.1 Listeria innocua strain S22_L001 S22_L001_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1133724 29 100.0 35 ............................. ATCGACAAAAATTTAGGTTATGCGTGGATTGTTCC 1133660 29 100.0 36 ............................. AAAGATAACTATGATTTTGCTGATGTTTCTGACACG 1133595 29 100.0 35 ............................. AGCGCTGCTTTGAGTAAGTTATTTTCTTCTACTGC 1133531 29 100.0 37 ............................. AAAATATTGGGGTGTTTAGCAAGTTGTAAGACGCGAT 1133465 29 100.0 35 ............................. GTAAAATGTACCATTCGCATTTTCATCTGTTTTAA 1133401 29 100.0 35 ............................. CAGCCACATAATGGACTGGCGCCATTTTACCTTCG 1133337 29 100.0 36 ............................. CATACTGTTTCCAGAACAGTTGTTTACTGATGTTCC 1133272 29 100.0 36 ............................. TTAATAAAAATAGCTTGGGGGTAAGATGATGCTAAC 1133207 29 100.0 37 ............................. TTTTTAGCGTTATTCTTAATCGTAGCACCAGCGTTTT 1133141 29 100.0 34 ............................. CTGATTAAGAGTTGGTTTTGTGTTGAGCAGTTAC 1133078 29 100.0 34 ............................. ATAAGTCCGGCTACTTTCGAAAACACGCTACTAA 1133015 29 100.0 34 ............................. TGTTCTTCGTAAAACCGTTTGTTTTGAGTACATT 1132952 29 96.6 36 A............................ TCACTTTTACTGTTTTAAGAACACTGGATAATCAAA 1132887 29 100.0 36 ............................. ATTGGTTTGATAAAGATCAAAACCAAGTTGCTGAAA 1132822 29 100.0 35 ............................. GAAGAAGGGGTTATGGAAAAGGAACTAATTATAAA 1132758 29 100.0 35 ............................. ATATACGAGTGAAAGGAAGCGTCTAAATGACTAAG 1132694 29 100.0 36 ............................. ACCTTCATAAGCAATGCTAATAACTTCAAAAGTCTT 1132629 29 100.0 35 ............................. CGACAAGGAGATTGCTTTATTGAAACGGGAAGATA 1132565 29 100.0 35 ............................. ATCGATGCCGCAGTTTCGAAAGCAAAAGCTTACAC 1132501 29 96.6 34 ......G...................... ACAATTTGTGAGTTCAGTAGGTTTATCCCCACTC 1132438 29 100.0 35 ............................. AAAGGTTCGGACTTGGAGAAAGTAGCCGACTATTT 1132374 29 100.0 36 ............................. GTTGTCCATATGTCTAATTCTTTGATATACACTATT 1132309 29 100.0 38 ............................. CTTCCTTTTTAGAGGCCTTTTCCTTCTCTTTTGCAGCA 1132242 29 96.6 36 .............G............... TTATGAATTAGTTTTGTTTTATACGTTGTTTTTACA 1132177 29 100.0 35 ............................. ATTGGAAAGTGTTCTAAAAGCACTTGCACAATGTC 1132113 29 100.0 36 ............................. CTGATGTAGCTTATTTTTAACTGTTCGGTGAAATAA 1132048 29 100.0 37 ............................. AAATACTTGCAAGTTTATCTTGATGCTTCTGACTATC 1131982 29 100.0 36 ............................. CACGGTATCTACAATGAGCATCTGTCAAAAGACTGC 1131917 29 100.0 36 ............................. TCAAGTGGAAATCGAATATAAAGATAATCATTTTTT 1131852 29 100.0 35 ............................. CTATTGAGTTTTGTATTATTCCAGACTGGAATTCG 1131788 29 100.0 34 ............................. ATCGCAATATCATTCCCTAAAATCATTTCTATTG 1131725 29 96.6 36 .........................G... TTTGTTAACCCACTAGCTAAACCACCAGCGCCCTTC 1131660 29 100.0 37 ............................. TTGATTATCTTGTAGGCCGCACAGACAATCCGCTTAT 1131594 29 100.0 36 ............................. ATAAGAACAAACGGAACAAATGATATTTTAACGCTT 1131529 29 100.0 40 ............................. CTCACTTCCACCACCTCGCATTCTGTGTTTGTTTCGTTGA 1131460 29 100.0 36 ............................. ACTAACAAAGCACCTGTAAAAGCTAATGCAATCGGA 1131395 29 93.1 0 .......................C....C | A [1131370] ========== ====== ====== ====== ============================= ======================================== ================== 37 29 99.4 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCACTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTCTAATAGCGTAAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGTAGAATGTCTTTAAAGGTTTTTAGCAAAAATCCGAAGGGATAAGTTATGATTTTCACCCGATTTTTAAGAGGTCGACAAATATAGTACCCTGAGTTATGATGGGAGTAGGCAGAAAATAGAGCGG # Right flank : TTCCTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCCTACATTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCTGCCACAACTACACAGCTTAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCCTTCTCGACACCAAACGTCTTGGCTGCGAGTTTGGTATTGGAGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGTCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //