Array 1 6242-3951 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACVET010000002.1 Listeria welshimeri strain FSL W9-0994 NODE_2_length_320627_cov_127.939807, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 6241 29 100.0 37 ............................. ATAAAAACTCGATTCATGTTTTGAAACATTTTGTATT 6175 29 100.0 36 ............................. TTAATAATTGACTCCTTTGTCATTGTATTTTTTATC 6110 29 100.0 35 ............................. CTTATTGAATTTACTGGTTCAGGAAACATAACGAT 6046 29 100.0 35 ............................. ATATATAAATAATAGTTTGTTTTCACTCCTTTAGA 5982 29 100.0 36 ............................. TTTAATAAGGAGGAGACTATGAAACTATATCATACA 5917 29 100.0 36 ............................. TTTTCATCATATGCCTTGGAGAGGTAAGTTAATACC 5852 29 93.1 35 ........G................G... TTTGGTCGATTGACTTTTGCGTGTTACCTATAACT 5788 29 100.0 37 ............................. TTTCTTACCCACTCTTCAATTTGATCTTCTACAAAAA 5722 29 100.0 37 ............................. ATAACTTTAAAAGCTTACGTGTAGCAAAACGTATTGC 5656 29 100.0 34 ............................. AACTCCATGTAAAAATTGCATCTTGGAGGATTTT 5593 29 100.0 35 ............................. TTACTTATCATCCTCTACTTTTTTATTTTTATTCA 5529 29 100.0 35 ............................. ACTGGAAAAGGTTCTGAAAAAGAACGAGAAGCACT 5465 29 100.0 36 ............................. GCACAAGAATTCGAATTATACTGCTTAATTAAAGAG 5400 29 100.0 35 ............................. AGCATTAGATGTAGCTAAAAATGCATTTAAACAGT 5336 29 100.0 34 ............................. TTGAGTAAGCGATAACACATATCTTCTTTCTACC 5273 29 100.0 35 ............................. CTGCACCCATCTTGATTTTTCTTGTAACAACTCGG 5209 29 100.0 36 ............................. TCTATAGGCCAATTCGCAAAGCACGGGGTCGAAAAT 5144 29 100.0 36 ............................. GATGAAAAGAGCGGCAAATGCAAATTCAACTAAAGC 5079 29 100.0 37 ............................. CCATTTACAGGTGCAGAGATAGTGCACAACACCACGC 5013 29 100.0 37 ............................. TAACTATCTGAATAGCGGCCCCGAGCAGCAGAGGCAA 4947 29 100.0 37 ............................. TATGAAGTCCTTTTGTTATACGATTTTTTTGACTTTT 4881 29 100.0 34 ............................. CAAATTCAAACCATTCCTCGTTCATTCCGCCACC 4818 29 100.0 36 ............................. TACAATAAGCATTTGGTTACCCTCTGGCATTTTTTC 4753 29 100.0 34 ............................. CTGGTTATAAAAACATAATAATCAATGGTGCAAA 4690 29 100.0 36 ............................. AATGGTGAATGCGTTGAAGAAGGAGGAGGACGAATG 4625 29 100.0 35 ............................. TACTCTTTCATGCAGTAACGCCTAATTGCATCGAG 4561 29 96.6 35 .........T................... TTTAATGCCCCTTCTATTGCATGTTCAATGGTTTC 4497 29 100.0 35 ............................. TTAAGAGCTATGATTTCATTCCTGTGTTCGACCAT 4433 29 100.0 37 ............................. GATGGTTCTATGACATCATCAAGTGAACTAGGGGTTA 4367 29 100.0 35 ............................. GGCAATGTTGAAGCACTTGCACAAAAACAGCAACT 4303 29 100.0 35 ............................. TCGGTTGTTACAATGTTTTCTTTTGCAACGACATC 4239 29 96.6 36 ............C................ CAGATTTGTGACTCTTGCTCACATTTAAAAGACATA 4174 29 100.0 37 ............................. TTATCTAGAAATGAGTGGTAATGGCTCAGTGAAAAAA 4108 29 96.6 36 ................A............ AGCGTAGTATCTTGTGAGTAAATACTTGCTAGTTTC 4043 29 96.6 35 ................A............ GTATTTGTAGAGGAACAACAAAAAGTAATAGACGA 3979 29 82.8 0 AG..............A......C....C | ========== ====== ====== ====== ============================= ===================================== ================== 36 29 99.0 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAATGGTGGAGCGAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAGGGTGAAATAACACCTGCTCTTTTAGTGAAACTAAGAATGGAGTTAGATAAGTATATTCGAGATGACCAAGATTCAGTAATTGTATTTTCTAGTAGACAGCAAAAGTGGCTAGAAAAAGAATTTTGGGGGTTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGATCTGTCGACCCTTAGTAGTGCGAAAAATAGTAGGGTTCGACAGATTGACGGAGATGACTGGGGGAGAATGATTTTAAAGGTTTTTAGTGAATATCCGAAGAAATAAGTTATAATTTTTATGCAATTTTTCAGAGGTCGACAAAAATAGTGCCCTGAGGTATTATGGGAGTAGGAGTAAAAAAGGGCGG # Right flank : TCCTTCCCTCAACAATACACCCCCCAAATAAAAAAATGGACCTCAACCTCAGTCCAAATCTTTTTCAATACTACCTAAACCAACCAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACCACACAACTTAAAAAGAAAATCTGCACAGTTTCAGCCATCTCTGCTCCAGCGAAAAATAATCCCCACACAAGCCCTACCGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGGACTTTCTTATTCGCAAGTAGTTCCTTCTCTACACCGAACGTCCTCGATGCGAGTTTGGTATTTGCGAAAAACATTTCTAAAATCATAATATAAATATGTTCTATCATTACGATGAAAGTTAAAATAAATGCTAAAATGTCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATGAATTGTAAATTTTTCATGAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //