Array 1 74479-75361 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDNV010000007.1 Escherichia coli strain 18FS3-1 NODE_7_length_195839_cov_45.336413, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 74479 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 74540 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 74601 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 74662 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 74723 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 74784 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 74845 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 74906 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 74967 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 75028 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 75089 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 75150 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 75211 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 75272 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 75333 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 101064-102251 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDNV010000007.1 Escherichia coli strain 18FS3-1 NODE_7_length_195839_cov_45.336413, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101064 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 101125 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 101186 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 101247 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 101308 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 101369 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 101430 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 101491 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 101552 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 101613 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 101674 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 101735 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 101796 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 101857 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 101918 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 101979 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 102040 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 102101 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 102162 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 102223 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //