Array 1 1210-1906 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSAP01000045.1 Streptococcus phocae subsp. salmonis strain C-4 Contig45, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1210 36 100.0 31 .................................... CTTTGGGGCAAAGATTGCTTTTTATATGTTC 1277 36 100.0 30 .................................... CATGACACAAGAACAATTGTTAAATGTTTA 1343 36 100.0 30 .................................... CCTTCTGATGTCGTGAGACGTTCCGAGCTT 1409 36 100.0 30 .................................... TTAGGGCTATATAGTGGGCTAGATGTCAGT 1475 36 100.0 30 .................................... AGAACTATGATTATCTCACTTTTGGTAAAT 1541 36 97.2 31 ...................................A CTTCTTCAATAAACATATCGAGCACTTTGTC 1608 36 100.0 30 .................................... TTATTGACACTGACACCAGCGTAATACATG 1674 36 100.0 30 .................................... CGCACCTCGACTGTATTTCCACAATCGCAT 1740 36 100.0 30 .................................... AATAAAGATGCCTAACAATTCGGCCTACTC 1806 36 100.0 30 .................................... TAGACAAATGGTGTTTTTTGAGAAGCGCCC 1872 35 97.2 0 .............................-...... | ========== ====== ====== ====== ==================================== =============================== ================== 11 36 99.5 30 GTTTTAGAGCTGTGTTGTTTTGAATGGTTCCAAAAC # Left flank : GTAGGCTTGTTAGAATTTAAGGATAAGAAGGTGAAGCATTTTTCATTAGGAATGAAAAAGAAAATAGGAATCGCTCAAGCCATTATGGAAAATCCAAAAGTTTTATTACTGGACGAACCGATGAATGCTCTTGATGCGGAATCAATCTTGATAATGAGAGAAATGATTTCACGGTTATCACGCAATGGCACAACTGTCTTGATAGCCAGTCACAATCAAGAAGATATTGATTATTTATGTCATAAGGTTTATAGGATAAAAGACTATCAGTTAATTGAAGAGTTATAATTTTTTGTGATTTCACTGGGTAGTAAATTTAGGTGGTGTCATTTTATCAAAGTTTACTTTAACTTATTAGATCTAGAAAAGATTGATTCTGCAAACGGCTTAGGGTATAATGATAGTAAGTTATCAAATTATAATAGGAACAATTCAAAGCTGAAGTCTAGCTGAGACAAATAGCGCGAATACGAAATCTTGTGATAAAAACATTCCACGAG # Right flank : CTGAGGGTTTCACCCTCTTTTTTATATGTTTTAACAGTTTTATTTCCGTAAGAACGAAGATGTTATTATGTGTTAGATAGCTTGGTGTCCGTTGTCATCTTTATATTTCTATTCCTTAGCTCTCGTGTTATAATAGTAGGTACGTTGGAGGTGACAAATGGAACAGACATTTTTTATGATAAAACCTGATGGGGTTAAACGTGGATTGATTGGTGAAGTGTTGCAACGTATTGAACGTCGTGGTTTTACGTTTGATAAGTTAGAATTGCGCCAAGCGAGTCCAGACTTATTGGCTCGTCATTATGAAGCCTTGGTCAATGAATCGTTTTACCCTCAGCTAGAATCTTATATGACGAGTGGTCCAGTTCTTGTGGGCATTCTCTCAGGAAATAAAGTGGTGTCGTCTTGGCGTATGATGATGGGTCAGACGCATCCTCAGGATGCTGCTCCAGGGACAATTCGTGGAGATTTTGCGCAAGCACCTGATGAAAAAAGCAGTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 775-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSAP01000085.1 Streptococcus phocae subsp. salmonis strain C-4 Contig86, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 774 36 100.0 30 .................................... GACGAAATGAGTTATAACAAGAGGCGATTT 708 36 100.0 30 .................................... TGAGCTTTTCTACTATTATAAAGGAAACGT 642 36 100.0 30 .................................... AGAACCAAGTTTAGAAACTCATGATGACTT 576 36 100.0 30 .................................... TGTGATATAATTAGTTATAAAGTAAAGTAA 510 36 100.0 30 .................................... CCACTATCAGATCGTATGGCATCGACTATC 444 36 100.0 30 .................................... ACGTGATAGCTGAAACATTGCAAATTGATT 378 36 100.0 30 .................................... GTTTGACATAGAACCTAAATACGACAGGCA 312 36 100.0 30 .................................... AACCTGGAACAGTTATTTCATTCCCATCTT 246 36 97.2 30 ..........................A......... CTGTGTTACCAGTTATAACAACTGAATTGT 180 36 100.0 30 .................................... TATCTTATCTAGTGCTAGATTATGAGGACT 114 36 100.0 30 .................................... AGTTACTGCTAACACTAACTACGAAGAATA 48 36 97.2 0 ..................................C. | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 99.5 30 GTTTTAGAGCTGTGTTGTTTTGAATGGTTCCAAAAC # Left flank : TTTCATTTTTTTGGCGGGTACTTTATAATCATCTGTAATAACAGCCCAGCCAACACTATTCGTGCCGATGTCTAATCCAATTGAGTACGATTTTTTCTCTACCATAGCGGTCTCCTTTGACAACACCTAAAAATTGAGATGATTTTAATAAAATCATTTTTATCCAAGCAGCTAAGAAGAATACCTAATTTTTCCTAGCCAGTAATAGAAAGCGCCATATTGACGCTTTTATGCCACTATTTTATCTTTAATAATGCATTAATGCAAGAGTTTTTTAAATTTCTTTTACTTTAACAATATAACTGCTCTCACCACAGCTACAGGAATAAGTAAGTTTCAGATTTAGCACCAACTGATAAAAGAATAACCTTTAGAAATCATTGATTTATAAGGCTTAAAGTGGTATAATCGTTTTAATAATATGAGAATCATTTAAAGCTGAAGTCTAGCTGAGACAAATGGTGCGAGTACGAAATCTTGTGATAAAAACATTCCACGAG # Right flank : CAAATTTTTTTAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 2 7288-8180 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSAP01000085.1 Streptococcus phocae subsp. salmonis strain C-4 Contig86, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 7288 36 100.0 30 .................................... ATCTTTAATATTTTCGTATGATATCGTTAA 7354 36 100.0 30 .................................... CACTATTAAGACAGCAAAACATCCGTATGT 7420 36 100.0 30 .................................... TTGACTTGTGTCATAGTGTGTGGTATAATT 7486 36 100.0 30 .................................... CAGTAAAAAAATTTGGAACACGTTACCTAA 7552 36 100.0 30 .................................... GTACGGTTCTTGCGGTCAAGGTTGCGAAGC 7618 36 100.0 30 .................................... CTGGCAAAATCGTTACATTCTCCTCGTTTA 7684 36 100.0 30 .................................... ATGTGTTTGATGACGACAACTACGAAGTTT 7750 36 100.0 29 .................................... CCTGGGTGAAGAACCTGCAGTAACTGTAG 7815 36 100.0 30 .................................... AAACCGGTGACGGCTATGATATAAGTTGTC 7881 36 97.2 30 .......................G............ TTATTGACACTGACACCAGCGTAATACATG 7947 36 97.2 30 .......................G............ TAATCACCGAAAGCTCTAAGATATTCCACT 8013 36 97.2 30 .......................G............ CTGTCTTGTAAAAAGCGAATGGGTTGAGGA 8079 36 97.2 30 .......................G............ AGAGAGGCAGTAGTGAACAACAAAATCAGT 8145 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.2 30 GTTTTAGAGCTGTGTTGTTTTGAATGGTTCCAAAAC # Left flank : AGAATTAATTGCTTTTGAATGTTTAGAAAGTGAGCTAGATTTAGAATATGATGAAATCACTATTCTAGAATTAATAAAAGCTCTGGGCATCAAAATCGAAACACGTAGTGATACAATTTTTGAAAAGTGTTTTGAGATTCTGCAAATCTTTAAATACCTAAGCAAAAAGAAATTATTGGTGCTGATTAATAGCGGAGCTTATCTGACAAAAAGTGAACTTGATAGGATAAGAGAATATATTGAGTTGTCGCATCAGACGGTTCTCTTTTTAGAACCGAGACGTTTATATGATTACCCACAATATATTTTAGATGAGGATTATTTCTTGATTACAGAGAATATGCCCTCTTAAATTGAGCCATGGAAAAGATTGATTCTGCAAACGGCTTAGGGTATAATGATAGTAAGTTATCAAATTATAATAGGAACAATTCAAAGCTGAAGTCTAGCTGAGACAAATAGCGCGAATACGAAATCTTGTGATAAAAACATTCCACGAG # Right flank : CTACTTACATTTTTGGGTTCGTTAAATTGTCGATTAAAGTAACTATGTAGTGTTCTAGAGATATCAATATCTCGTTCACTAATTTTAATTAGTGTAGTCAATTCAGTAAAATGCCAGCTTTTTAGCCTTGATGTACAATCAAAGTTTTTTGTGTGATTATACTGATAATTTTTTTAGGAGGAGGCGGTAGCTTTTCTCCTTTTGTTTTATAAAAAAATTTTGGGAGAACAATTTTATGAACTATTTTCTTGCTGAGTTAAAGAGAGCTGTGCTGTCAAAAAATGTTACTGTATCAATTTTTCTCATTTTAGGAAGTTTAATTTTGGGAATGATTAGCAGTTGGTTATCTATAACTGAATTTGCGGGGCCTTCTTTTTTCTTGTATTCCTTTTCCTTGGGGCCGAGTGCAATCCTGCCAGTTGTGGCACCTCTAATAGTTGCTCTCCCATTCTCTAATTCTTATTTGCAAGATAAAGAAAACAATATGATTTACGGTATAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTTGAATGGTTCCAAAAC # Alternate repeat : GTTTTAGAGCTGTGTTGTTTTGAGTGGTTCCAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //