Array 1 26382-25334 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNWF01000006.1 Escherichia coli strain MOD1-EC6433 MOD1-EC6433_6_length_219099_cov_38.0838, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 26381 28 100.0 32 ............................ AAGGCAAGTGATGGCGAAATTACCCGCGCAAT 26321 28 100.0 32 ............................ AAATTGGGGACACTTTCTTCTACCTCTTTTGT 26261 28 100.0 32 ............................ TCAATGCTGCTAAACGCGCACATGAAGAGTCA 26201 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 26141 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 26081 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 26021 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC 25961 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 25901 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 25841 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 25781 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 25721 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 25661 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 25601 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 25541 28 100.0 32 ............................ GACGAATGCCGCACACCAGGGCGTCTCGTCGT 25481 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 25421 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 25361 27 92.9 0 .......................C-... | T [25342] ========== ====== ====== ====== ============================ ================================ ================== 18 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 35769-35439 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNWF01000006.1 Escherichia coli strain MOD1-EC6433 MOD1-EC6433_6_length_219099_cov_38.0838, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 35768 28 100.0 32 ............................ AGCAGCTTTCCAGCGAGCGCGGTTAACTCACT 35708 28 100.0 32 ............................ AGAACTCGAAATTTATCGCGGGACTTTTCAGC 35648 28 100.0 32 ............................ AGGCTGCTGGCGCTCTCGTTGTTAACGGCAGC 35588 28 100.0 32 ............................ GTTCCACGCGGATATCTGTAATTTCCAGCAAA 35528 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 35468 28 85.7 0 ....................T...C.CT | C,A [35442,35445] ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //