Array 1 148-775 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOZU01000209.1 Paracoccus pantotrophus strain KS1 NODE_209_length_933_cov_63.8995, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 148 32 100.0 35 ................................ CCCGCCATGAAAATACAATGCCTCGTACACTCGTC 215 32 100.0 34 ................................ ACTTTTACTGCAACGCTGGCACAACCGGGACAGT 281 32 100.0 35 ................................ GGTCACGACATTCCTGACATCCGAGGTTCCGACCG 348 32 100.0 35 ................................ GACGCCCTGGGCATCGAGATCGAGCTGTCGCCCCC 415 32 100.0 34 ................................ CGCTGGAATGGGAATTGGTACTCTACCGCGCTTA 481 32 100.0 33 ................................ TGCGCATAACATCGGTGAGGCTGTCGATATCGT 546 32 100.0 33 ................................ GTTGCTGCGCCGGATGGAGCGCGATGACCTGAT 611 32 100.0 35 ................................ GGCATGATGTCCGTCGCATCGTGCTCACCGATGCC 678 32 100.0 34 ................................ GTCCCGGATCCGGCCGAGCGCCATGGTGGCACTG 744 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 10 32 100.0 34 GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC # Left flank : TGAAGCCCTCAAAGAATGCCCATTCGTCGTCGGACATCAGGTTGCGTGCCAAGCTCATCTCCCATGTAGAGATGAGCTTGAATCACAGCCGACCGCGCAGGGGAATCCTTTTTGTCAACACACCCTAGTCATGACGCGCGATGAATTG # Right flank : GTTCCGTGGTGCAGATAGGTGGGTTGGTGTCTAGGGTCAGGATTCATAACCAGTAGATGACGACCGCGGCGAGGGCGATGGCTGAGAGGAACACCTTGGGACAGCGATCATAGCGTGTCGCGACACGCCGCCAGTCCTTGAGCCTGCCGAACATGATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 161-1654 **** Predicted by CRISPRDetect 2.4 *** >NZ_QOZU01000169.1 Paracoccus pantotrophus strain KS1 NODE_169_length_2475_cov_54.7206, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 161 32 100.0 35 ................................ CCTCAAGGAGGAAGGCTGATGCCCGCCCTTCGCCC 228 32 100.0 34 ................................ GCAATGACCGCGACCTGCTTGTGGTCGGCCTTGC 294 32 100.0 34 ................................ GTCCACGGCCAGTAATGGCCCGGTGCGCCGCCTT 360 32 100.0 35 ................................ CGGCCGTTGGTGGAATTCAGCGACCCGCCGAAGCG 427 32 100.0 34 ................................ GACAAAGGACCGGATGGCCCCGAGGTGCGGGACC 493 32 100.0 36 ................................ CGGCCAGAAGGCCACGCAAAGCGCGATGGCCCCGGC 561 32 100.0 33 ................................ ATCGAATTCCCGCTCCTTAACCGCCTTGATTTC 626 32 100.0 33 ................................ ATAGGTGACGCCCGCCACCGTCAGGTCCACGTC 691 32 100.0 34 ................................ CTGCGCCGTGAAGCTGTCCCCGGCCTTGACCCCT 757 32 100.0 35 ................................ GATATGATGGGCCGGCTGGTGCTGGGCGGGCTGGA 824 32 100.0 36 ................................ GCATGCCGGTTGCGCATCGCCTGACGCGGTGCAATC 892 32 100.0 34 ................................ TTATAGAGCGGGAATTGCTGATCCCTCGGGACAA 958 32 100.0 35 ................................ TTCGGCCCGGAGATCCAGGCCGCAAAAGCCGCGCA 1025 32 100.0 35 ................................ AACTTGAGGGTCCAAGCAGGACGAACAACAGGCCG 1092 32 100.0 35 ................................ TCCGCAAGCCGTCGTGCATAGGTCTCCAGCTTCAG 1159 32 100.0 35 ................................ TGTCGTTCCGCCAGTCCAAAACCGGAGGCATGGCC 1226 32 100.0 35 ................................ TTCAACACCTGCATTTCGGAGGCTCTGTGATGGAT 1293 32 100.0 35 ................................ CTGATCGGCCCGTTCGATCATATTGATTGTAGCTC 1360 32 100.0 34 ................................ CTCATGTGAGGCCGGTAAGTTGCTACCGGGCGAG 1426 32 100.0 34 ................................ CCACCAGCCTTTTGGCCGTCCTCGCGCTTGTCTC 1492 32 100.0 34 ................................ CCATATCTGGCCGGGACGATCTGACGCTGGAGGC 1558 32 100.0 33 ................................ AGCATCGAGATTGACCGGCTGGCCGAATGGCTA 1623 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 23 32 100.0 34 GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC # Left flank : TGGGGAAAAAAGGGGCAAGCTTGGCCATCTGCTCGTTGGTCAGCCAGTACAGGTCGCTCATGTCACCGCTCCGTTTTCCGAGCCGTGAATCACGCAGCGCGTCGAAAATCAATGCATCCTGACCCTAGCTTGGAGCGGGCGTGGTCTGGCTTCATCTGGAG # Right flank : CTGGGTGGTGCCCGGCAAGGTCTCCGTCGCCGACGCGTCTGGACCTATGCCCGGCAGATCATCCGGGCGAGACAGGTCTGCGCCAAGCGATCCTGACCGTGGAACGGAACAGGACCAGAACAAGAAAGTGATAGCCGGAGTGATAACCCCCTTGACCCCATCAACCGAAAACCCTAGCAAACGCAAGGCTCCGGCGGGTTGGCGGAGAGGTTACGCAGCGGATTGCAAATCCGTGAAGACCGGTTCGATTCCGGTACCCGCCTCCAAATCTTTCAACGACTTAGCGGACATGACCGGCCCAAAGGTATCACCGTGGGTATCAGGTTGCTGTTCTGTGCCTGTTCTGTTCATTGCCGTTTTTCCCGCGCTTGACGCGCCCGCATTTCCTGCCGGGCCTCGCCCGCGTACTTCGCGATCATCTCTTTGGTGGCATGGCCAGAATAGGCGGCGATCTCGTCATCATCGCACCCGGCCCACGCCAATTCCTTCACCCTGCGATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCCCCCTTCGCGGGGGCGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //