Array 1 1604-3650 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDDC01000016.1 Moorella thermoacetica strain DSM 21394 MOTE_contig000016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1604 37 100.0 35 ..................................... GCGTCTGTCATGGACCAGTATGTAAGCCAGACCGT 1676 37 100.0 35 ..................................... TTAATATAATCGGGCCATCGGTCAATGCCAGCTAT 1748 37 100.0 34 ..................................... GCCGCTAAGAGTGTATTTCTCAAGCGGTATATCT 1819 37 100.0 35 ..................................... GCCGGTGCTGACTAATTCTTGCCCTTTGGTATCGC 1891 37 100.0 34 ..................................... TTGACACAGGCCTCACAGGCGATACACCGGCCGG 1962 37 100.0 36 ..................................... CTGCCCGTTCCAGGTCCAGGGCTTCCAAATTATCGT 2035 37 100.0 35 ..................................... TCTACGGTCGTCGGCAACGTGACCATCGAGTGGAC 2107 37 100.0 35 ..................................... GAACATATAGAGCATTACGCGGCCATAGTCCGGCA 2179 37 100.0 34 ..................................... GTTACAAAATGTTAAATGTTATAACGAATGGCTT 2250 37 100.0 34 ..................................... AAACGCTTTGCATCTCGGCTGCGGTATATTGCGT 2321 37 100.0 35 ..................................... GCATCGGTCTTAGCACTCTTATGCGGACCACCTAT 2393 37 100.0 35 ..................................... TGCACACCAACCTTACCACCATCACCCTTTACCCG 2465 37 100.0 36 ..................................... CCGCACTCTCTGGATCATAATAGCCGTCCGCTCTAC 2538 37 100.0 35 ..................................... GCATTTCCAAATCTTACTTATTGTGTCCGCGCTAT 2610 37 100.0 35 ..................................... AAGCAGGTATGCTCTTATTCTAACGGGCTTCATAG 2682 37 100.0 35 ..................................... AATTTTATGACTGGTCTATGAGTAATGGTTATAAT 2754 37 100.0 34 ..................................... GACGCACTCATTGGCTATGTAGATGTGATTGCGG 2825 37 100.0 34 ..................................... CAAAAAACGAAGTTTCGTTCCCTGGCTACGCCAA 2896 37 100.0 36 ..................................... ACCGTGTTGGCCGAGCAGCAGATTACCAATGAGCAG 2969 37 100.0 35 ..................................... GCCTATCAATGGCTGCTGTTCGGCCGCGACAGCCA 3041 37 100.0 34 ..................................... CATCATGGTCAGCGCCGATCTGCTGGTACATGAT 3112 37 100.0 34 ..................................... GGCAGCTAAGGGGCCGGGCGTAGTTGGTGCCAGG 3183 37 100.0 34 ..................................... TTCTTGCTCTGCGTTGCTCTATTGACTTATTGGC 3254 37 100.0 35 ..................................... GCCCTTATTTGGCGGTGATTTAAATGCCTTTAATT 3326 37 100.0 35 ..................................... GTGGACTGGACCAGCTTCAGGATGCTAATATCGGG 3398 37 100.0 35 ..................................... ATCGTTTTCCGGCTTAAGTGTACCGGGTGGTTTTG 3470 37 100.0 35 ..................................... ACTTTTCTACACCGGGACAGAACTGGGCGAAGAAT 3542 37 100.0 35 ..................................... ACGGCTGCCAGGGATGCCCGCATCTGGTGTTGGTG 3614 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ==================================== ================== 29 37 100.0 35 GCTTCAACGTTGCCGCCTCCATAAAGGCGGTTAGAAC # Left flank : TTCGCTCTGCTCCCATTACGGAGCTTCTTCACTACTACGGGCTGTTCCGCCCCTGCACTCCGCATTGGTACTTTCGTCCTTGCGGGTCCTCCGCTTGGAGTTTTCCCTTGGCATCGGAGAGCAGGTTCCCACGTTCTTAACCGCAGCCTGTGCCACGTTCACGCCGCCTTAATGCCGGCCACCACCTGGACGGTAAACAGGTTTCCTCCAGATTTATCCCGGGCTAACGACTACCTCCCGGTTTTGATGGCGTCCCTACGCTTTCGACACTTTATCAGCGGTTCACGGGTGTTCGTCTCCATTGGCACTCACCTGACGAAGTCCTGCTTCGCCTTTTCCGTAACGCTCACTACCATGGCTTTTGACCACAGCAGCTTACGGTGGTTTGGAGCCTCCACCTGTATGGCGGCTCCGAGGGGCCTTCCCTCATCTGGCGGTTAAGCACAGCGTTCGGGTTCTTAGCTAACCCTGCACCTTCGTGGCGCACTATCGTCGGCGAA # Right flank : CTCTGGCCTTGCTATCTCCTGCAAGGCAAGCATTTCAGAAGGTATTTTCGCGAATCCAGTTTTCATCTTGTAAGTTGCAGGTAAAATTTATAAAAAAAGCCTGGGAAGCCTTGTTAATGCTGAAGCGCGAATCCCCCCATAAAAACGGCATCGCTGGATGTTCGCGATGGTAAAATAAATCCAACTGTCATTCTATCTACTATAATACAACAACAGGTGTGGCAACGCTCCTGTATTCCCCCTTACCAACCCTGTACTGGGCGACCTCATAGATACCGGTAATGCCATACTGGCCAAATTGTTCCAGAGCGAGATTTTCGGCCACAACGAGATGCAAAAGGCTTCTTAAAACCGGCAAGCTTATAGGATAGTGCCACACAGGAAAACGAAAAACAACATCCCCGTTTCTCACGACAACGCCGGGAAGTACTATATCACGGCCGCTCCGGGTAAGGTACGTTACATAGAGTGGAAGGGATTCAAAGGCCAGCCACTCCCCT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAACGTTGCCGCCTCCATAAAGGCGGTTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 35397-38766 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDDC01000001.1 Moorella thermoacetica strain DSM 21394 MOTE_contig000001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================================================================================================================== ================== 35397 37 86.5 194 ....T.........T.....T....A..A........ GGTAAGGATTGAGCCAAAGATGGTGTGCGCGAACCCCCAGTGGAGCTGCAAAATCTGGATGTTTCGCGATGCGGCATTTCTACGGACGGCCCGGGCAGTTACAGGAGCCCCGTCCGGTCAAAAAACGCCCTGGCCGCTCGGTTCGCGCTGGGTGGCCGCTAAAGCCGTCCAGAAAAAGAACTTTTGCGCGGTAT 35628 37 100.0 34 ..................................... CCCGCAGGAGGCGGACCGCTATAAGGGCGCGTCA 35699 37 100.0 36 ..................................... ATGTTGTGGTAAGATAGCAATACCGCCCGACAGGGT 35772 37 100.0 33 ..................................... AGACAACTTTACAAAAATTTTCGCGCCAACCAT 35842 37 100.0 34 ..................................... TTTATCATCCTCACCGTGATGGCAAAAACAATTC 35913 37 100.0 35 ..................................... ATGTGAAACAAAAGCCCCGGTAGGGGCCGGGGGGT 35985 37 100.0 34 ..................................... CCAACTAATTTTTAATTGGCTTAAACCTGTAAGG 36056 37 100.0 34 ..................................... TAAAACATTCCAGAGCCGAAAAGAGGCTAAAGCC 36127 37 100.0 36 ..................................... ATCAGCTTCCCGTAATCCGTCGCCACTTCGGTAACG 36200 37 100.0 36 ..................................... GACAATAGGGGTAATGGTAATATTGCCAGTCAAAGT 36273 37 100.0 34 ..................................... ACCAGGAACCCGATCAGGGCGGGGAAACCTTTGT 36344 37 100.0 34 ..................................... ATTTTCTGCCAGATGTCCTTTGTTAGGAGTTTCC 36415 37 100.0 34 ..................................... AGGTTCTTGGGCACAATGGTAAGAGAGAAGCTCT 36486 37 100.0 35 ..................................... ATGGTTTCAGCGGTCGCCCCTGGGATAACATACAC 36558 37 100.0 35 ..................................... TTATTTGAGCATCCGGCAATACGTCAATGGCTTGA 36630 37 100.0 33 ..................................... ATTTAACTCCCGCAGTTTCTGCACTAATGCCTG 36700 37 100.0 36 ..................................... CCTGACCCCACGTCGGAACTGCTTTCCGTCAAAACC 36773 37 100.0 36 ..................................... CCTGGCCCGGCCAATGCGCTCCAGGGCCTCCTTGAC 36846 37 100.0 37 ..................................... CTGCCTGAATGGTGTATTTACGTCGAGACGCCGGGGA 36920 37 100.0 36 ..................................... TTATGTCCGGTTTGCTTTGTCGTCGGCCACTATAAC 36993 37 100.0 34 ..................................... CGGGTTAAACTTATCGTAGTTAGTCAATTAAACC 37064 37 100.0 34 ..................................... CTCGCGCTCCTGCTCTGCTTCCAGATGGTCACGG 37135 37 100.0 35 ..................................... AAGAAATCAAAATCATTTTCGCTGCAATAGAAGGC 37207 37 100.0 35 ..................................... CCCGGGACCTGTGAGGAGGGGGTGAGGGATGAACC 37279 37 100.0 35 ..................................... ATGGTTGGCAGCGGTGTCCGTACCGCCGAAAATCA 37351 37 100.0 35 ..................................... CTCGTAGAGAAAAAACGTAAGGCCGCAAAGGGTGA 37423 37 100.0 35 ..................................... CCGACCACCCTGCATGACCTCTGTTCCCAGTTAAT 37495 37 100.0 34 ..................................... ATGAATGCCCCCCTGGCCGCTGCCGCACTGAAGA 37566 37 100.0 34 ..................................... AAACAGGCGCCCCCGAAGTTCTTTTGTGCGCTCG 37637 37 100.0 36 ..................................... ATACAGCAGTCCTTCAGTTCGCACAGACCGTAGCTA 37710 37 100.0 39 ..................................... CGGCCAGGTCGCCGCAGTCCAGCTGCGCAGCGCAGACAC 37786 37 100.0 36 ..................................... CTCGCTCCGTTGATAGAGGATAACTAAACCTGCTGC 37859 37 100.0 36 ..................................... TGGAGCACGCCGATGGCGGCATCCCCGACCGCGGAG 37932 37 100.0 34 ..................................... TCGCCGTCCATAGCAGCACAGATAGGACACAGCC 38003 37 100.0 35 ..................................... ATGAAAGGCGTTATTCATCTCGGTGACGGCTAGGC 38075 37 100.0 35 ..................................... CCAGGGCCGAAGTAGGCCAGTAAATAGCCCTACGT 38147 37 100.0 34 ..................................... TTCGCCTGGCTTGGTGCTACCTCAAGCCAGGGCA 38218 37 100.0 35 ..................................... CTGGCGTCACAGCAAATGGGCGAATACAGGGCCAT 38290 37 100.0 39 ..................................... ATATCGCATTTGGAAAGCAATGAAAAATCGCTGCTTTAA 38366 37 100.0 34 ..................................... TGGAGAAAGCTGGAATCATCGAGGATGACAGGAA 38437 37 100.0 35 ..................................... GCGCAAGTATAAATCCATTCGAGTTGACCGGCCGC 38509 37 100.0 35 ..................................... AATGTGACCCGCGAAGAATTGGCGGAGGTCCCCGA 38581 37 100.0 37 ..................................... AAATTGAACTACCCTGCCCATTAACTTCCTAATTTTT 38655 37 100.0 36 ..................................... GTAGTAAACTCGCTGAAACCTTAGCAGAAAGCATAG 38728 37 86.5 0 ......................T.......A...CCA | A,G [38754,38759] ========== ====== ====== ====== ===================================== ================================================================================================================================================================================================== ================== 45 37 99.4 39 GTTGCACCCGGCTTCCATGCCGGGTGAGGATTGAAAC # Left flank : CTTACCGATCAGGCCCGCCGGACCTTTTTGGAGGCCTATCAGAAAAGGAAACAGGAAGAGCTCATCCATCCTTTGTTAGGTCAACGGATACCCGTCGGGCTTCTCCCCCACATCCAGGCGCGCCTGCTGGCGCGACATCTTCGCCAGGATGCGGCCGAGTATGCGCCGTTTGTTGCCCGATGAAGCGGATGGACATCATCGTTGCTTACGACGTGAATATGGAAAGCAAGGAAGGGCAGGCCCGCCTGCGGAAGGTGGCCACCATTTGCAAGAACTTTGGCCAACGGGTCCAGTATTCTCTTTTTGAATGCCGGGTAACACCGGCCCAGCTTGAAGAACTCATTTACAGCCTCCGGAAAGTCATTGATGAGAAACGAGACAGCCTCCGCATCTACATATTGCATGGCGGCCGGGAGGGTTCCCTCAGGGTTTACGGCCAGGACCGGTATGTGGACTTCGATGGGCCGCTGATTCTGTGAAGGCCCTGGCGGGACGTTGAG # Right flank : ATTTATGTAAGACTTAGGAAACGTCCTTGCTAAAGAACTGGCTAAAGATTGTAAGACTATCGGTGACATACAGGAAAAGTTCAAGGAACTATTCAGAAATACCATTCAGCAGGTCCTTGAAGCCGAAATGGAGCACTACCTTGGCTACCCCAAGAATTCCTCTGAGGGAATAAGCTCCGGGAATAACCGTAATGGTTACAGCTGCAAAACGATTAAAACCAGGTCTGGTCAAATATAAATAAAAATTCCCCGGGACTGCAATGGTGAGTTTGAACCCCAAATAATCCGCAAGTACCAAACTACCGCCAACGAGCTGGAAGACCAGATAATAGCCATGTCGCAAAAGGTATGTCCACCTGGGATATAGAGGACCAGATGAAAGACATTTACGGGATTGAGGTATCACCGGTCTTGGTCAGTAAGGTAACGGATAAAATTCTCCCGTCATATAATTTTACCCCTGCCATTCTTATTATCTAATTTTACTGGCAGTACCTTTT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.33, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCGGCTTCCATGCCGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.90,-14.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : NA // Array 2 52535-42876 **** Predicted by CRISPRDetect 2.4 *** >NZ_MDDC01000001.1 Moorella thermoacetica strain DSM 21394 MOTE_contig000001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 52534 37 100.0 35 ..................................... TTTTTACATCTCGCCGGTCTACCCGGATTGTACCG 52462 37 100.0 33 ..................................... CCGCAAGGCGATTTACTAAAACCCTTGCCTCAT 52392 37 100.0 35 ..................................... GGTATCAATGTAATCCCGCGCGCCACCGTAATTGG 52320 37 100.0 34 ..................................... GGGCATACGCTCATGGCCTCGTCAATCCAGACGA 52249 37 100.0 35 ..................................... GGGCAGACAGGAGAGACCTGGGAGCCCGTAGGGGA 52177 37 100.0 34 ..................................... CCGGCCGGCCACAGTGAAGGGCTTAAAGCCGTTA 52106 37 100.0 34 ..................................... CCGGCAATCGCGGCCCATGTAACGGCTTACGCTA 52035 37 100.0 34 ..................................... ATGAATATGTTGATTTTAGAGGTTTGAATAGAAA 51964 37 100.0 34 ..................................... CTCCGCCCCGGTCACTTCGGCCAGCTTCGCCCGG 51893 37 100.0 33 ..................................... CTTACGACTCTGGAACAATTTGATGTCTTTCAT 51823 37 100.0 34 ..................................... TGGCGATATGCAAGCAAATAAAGGCGGTCCTTGA 51752 37 100.0 35 ..................................... ACGTGAAACAATTGGAGGGTAAACGATGGGCAAAC 51680 37 100.0 34 ..................................... CATCATTTTTTAATGCTAAACAATAAGTAAGCCC 51609 37 100.0 35 ..................................... GTAGCAGGGTTAAGGTCTAAACAATAAGCAGTAAT 51537 37 100.0 35 ..................................... TTTGTTAAATTCATCTGGAGGGAGGAAAATGGCTT 51465 37 100.0 35 ..................................... CAGGATACCCGGAAAAAATTCTTTCAAAGCCGCCC 51393 37 100.0 34 ..................................... CAACATAACCATACCCCTAAAGCAGTCATGGAAC 51322 37 100.0 35 ..................................... CTACCGCGGTAAAAGTGGTGCTATAATCAACTGCC 51250 37 100.0 34 ..................................... ATTTTCTCCTCTCCCTATTGCACTTAATAAACAA 51179 37 100.0 34 ..................................... TATTAATCCATTTTCCATATAATCTTTAACTTGA 51108 37 100.0 36 ..................................... GCGGATAAATTATTATAGACGCGAAACCCATTTATC 51035 37 100.0 34 ..................................... GGGGTGAAGAAAAACAAATAAGAGCGTTAGTGGA 50964 37 100.0 35 ..................................... TGGGGATGGTCTTTGTCGGCTGGCCTAAACTACAG 50892 37 100.0 34 ..................................... CTCCTAAAGAAGAAAAGGAAGAGGAAGAAAAGAA 50821 37 100.0 35 ..................................... CCCATTACGTGGACAGAATTAGGGCGCTAGGCAAT 50749 37 100.0 35 ..................................... AATATAATCACCAGTAATCATATCTACTAACCCAC 50677 37 100.0 36 ..................................... TGTATCCATTTAGGCACCCTTTACACATCCCGCCAC 50604 37 97.3 34 ........T............................ CCCAGGTCAACTCCCGCTGATTTAAGCCCCTCTC 50533 37 100.0 33 ..................................... TCCCCATAATATATTTTGCAAAGCGCGTCCGCT 50463 37 100.0 35 ..................................... ATAATAAAAAACCTTAGCCAGTATGTCGTCTACGG 50391 37 100.0 35 ..................................... AGACCGTAGGGTTAAAGCCGGGGGACCTAAACCTG 50319 37 100.0 35 ..................................... AATCAGCAGAAGTATCCTACTAGTCAAGCGCACCT 50247 37 100.0 36 ..................................... TTATTTGCCTGTCTATCATTCGCTCATCCTGAGCAA 50174 37 100.0 34 ..................................... CCCGATATTAGCATCCTGAAGCTGGTCCAGTCCA 50103 37 100.0 34 ..................................... ATGTATTATATCCTCATATTCCTTCAATCTAGCC 50032 37 100.0 34 ..................................... ACGCGACCGGAGCCGGTAACATAACGGCAGTTTA 49961 37 100.0 35 ..................................... CGGTCCGGTATGAGTAAAAACAATCTCGAACCGCC 49889 37 100.0 35 ..................................... CGGGCAGTCCGGATATACGGTTGCAGTGTCAAACC 49817 37 100.0 36 ..................................... ACGAATGATGCAGGCGAGCAAATCGGAACTATGCCC 49744 37 100.0 35 ..................................... TGGCGTATGTCGAAAATGGTCCAGATAAAAATGAC 49672 37 100.0 36 ..................................... AGGAACTTGATTAGAGGGGACAGTAATAAGCCTCTT 49599 37 100.0 32 ..................................... TTAGATTTCCTCATACAGAGCAAACTTATCAG 49530 37 100.0 34 ..................................... AGCCTTATTGTAAACCTTACAATATCCCTCCCGA 49459 37 100.0 36 ..................................... CCGGTCCTGCCTTCACCGTCACGTCCCCCGCCGCCG 49386 37 100.0 34 ..................................... CCTCCCACGGCGTAGAGCTTACCGTTGCCTGGAG 49315 37 100.0 35 ..................................... CGGGCAGTCCGGATATACGGTTGCAGTGTCAAACC 49243 37 100.0 34 ..................................... TGTATCATTTGCGAATATAGTTTCGCTGCGGCTC 49172 37 100.0 35 ..................................... ACCCGCACCGGCATCTGCGGCTTTAGCTGTACCGG 49100 37 100.0 35 ..................................... ACCCGGTAAGGAATATCCGCTTGATTGAATTTAAG 49028 37 100.0 35 ..................................... ATTTGGAGATAAATATGATATTTGCCGTAAACTAG 48956 37 100.0 34 ..................................... CTGCAAGGCAAAATATACTGATAGGACGGCTACT 48885 37 100.0 35 ..................................... TCGGCAACACTATTCCTGCTATGCCGACAATCAGC 48813 37 100.0 36 ..................................... GACGGTATTTAATCCGGCTAAATCGGGGTAAAGGTC 48740 37 100.0 34 ..................................... GCAATCATGTGCGGCGGCACCCGGAACAGGCCGC 48669 37 100.0 34 ..................................... TCAAAGTTGAGGCCAGCAACAATGCTTTTGACCC 48598 37 100.0 36 ..................................... CTGAATAACTACCAAGCGTCTGTCGGCATTATACAG 48525 37 100.0 35 ..................................... CAAAGTGCTTAATGAAGCAAAGGCCGGGGTGCGGG 48453 37 100.0 34 ..................................... CCCAGAGTATTGCAGCAAACTGATTATACTGTCT 48382 37 100.0 35 ..................................... ACCATGACCATACTATACCCTCACCATGGGCAGCT 48310 37 100.0 37 ..................................... CCCCTTTAGGTAAGTAAGGAGCTTATCCAGGGCCGCT 48236 37 100.0 33 ..................................... CTGCTGGCAGCGGGAATTGCAGAGGAAGAAAAC 48166 37 100.0 34 ..................................... GTTTTTTGCAAGAAAGAAGGGATCGTATTGCCGT 48095 37 100.0 36 ..................................... TATAAGAATAGCGGGATAACTCCCGCTGCCTTGCAT 48022 37 100.0 33 ..................................... TTAAAAGAACAGATCAAAGCGGAGCTTATGCAG 47952 37 100.0 36 ..................................... CCGGGTCATAATGACCACCCGCTCTACAAACAACAC 47879 37 100.0 35 ..................................... AGCCTGCGCCTGCTGCATGGCCTGCATAGTTTCAC 47807 37 100.0 35 ..................................... CTAAAACGATATTGGCCATCAGTACATCCTCCCGT 47735 37 100.0 37 ..................................... AGTAAGTATCCCGTAAAAGGCGTAGCCGATTTATTCC 47661 37 100.0 34 ..................................... TCCCCAGTTCGGGAAAGTACAATCTTAAAGCTAT 47590 37 100.0 35 ..................................... TTTTCCGGATTGGCTGCTACCTCCATTCACATAGA 47518 37 100.0 35 ..................................... AGTGTTTCTGCGGTCGCCCCTGGGATAACATACAC 47446 37 100.0 35 ..................................... CCGGCCCGGTGAAGGAATTGGCTACCAGCACGGCC 47374 37 100.0 36 ..................................... GGTGATCAAGCTGGTAGCCGAGCAGAACCAGGCCAT 47301 37 100.0 37 ..................................... CTCCTGTGGCTTATCCTGTCTCCATCTGGACGGCAAT 47227 37 100.0 33 ..................................... TCCTAAAAAGTAAATGGTATCGTTAATTATTAC 47157 37 100.0 36 ..................................... ATCCTCAATACGCAGGATTAGACCTTTTCGATCCAG 47084 37 100.0 33 ..................................... TTTACAGGGACTAACCGAAACTCTTACTGCCCA 47014 37 100.0 35 ..................................... CGGACCGGCCCCGGTGAGAGAAAAGACGGTTCAAA 46942 37 100.0 37 ..................................... AACTACTCAGAAAGTAGGCCCCGAAACGCTCGTCCAG 46868 37 100.0 34 ..................................... AATCCTTGTCCCGTCCTCAAACTGGACTATCCTC 46797 37 100.0 34 ..................................... AATCCAGCAGTAAACGCCGAAATAGCGGCCCGCG 46726 37 100.0 34 ..................................... CAAAATTTCCTGCGCCCGTTCCTCGACATAGGTG 46655 37 100.0 34 ..................................... GTCCCTGGCAATGCCCGCCTGCCCGCCGGCGGCG 46584 37 100.0 35 ..................................... CCCGCAACAAGCGTACTGTATGGACGATACCTACT 46512 37 100.0 36 ..................................... GGGGTTTTCTTGGGGGTTATACCAAAGCTGATCGCT 46439 37 100.0 36 ..................................... ATAGGGTATTCAACCCAGAATTTATTGCCTATTGTC 46366 37 100.0 37 ..................................... TGGAGACAGCCGGCGGTAAAGGTCAGCCCATTGCGAA 46292 37 100.0 34 ..................................... ATCAATGCCAAGAAGATATAGCAGTCTTGGATAA 46221 37 100.0 34 ..................................... ACCAGCACCACCGGCGCCACATTGAACAAGCCGA 46150 37 100.0 35 ..................................... GTATTTAGCCTTAGCTACCAGTACCGGGTCAATGG 46078 37 100.0 36 ..................................... TTCCAGCTCCGGGGCTGCTGTAGCACCGGCAGCGCC 46005 37 100.0 34 ..................................... ACAAATAGGTAATGGTGTTATAAATGATGTGCAT 45934 37 100.0 34 ..................................... ACGAATTTAATGAAGAAGATTATTGTACTATATG 45863 37 100.0 36 ..................................... TTGGCGACACCTGCCGGGAGTGCCCGGTGTGGGAAA 45790 37 100.0 34 ..................................... CTGGCAGCTCTGATGCAGTCAGCCCAGCTTGGAC 45719 37 100.0 36 ..................................... GGTACCGACACCAGCCCGGCGTCCAGACCGATACCG 45646 37 100.0 35 ..................................... ACGTCTTCCGCTCTTTCCAATTTCTGAATTTCCAG 45574 37 100.0 35 ..................................... CAGAACTAAATCTACGTGGAGGATACCCCCTACCC 45502 37 100.0 35 ..................................... GCTCTGGCCTAAGCCATTATCCCCGGTCCAGGAAA 45430 37 97.3 34 ..................C.................. ATACCCTCCTTAATAATTTCCTTCATAATTTCCC 45359 37 100.0 36 ..................................... ACAAAGTACCAGATTAAAGGCATATCTGATTTATTC 45286 37 100.0 35 ..................................... TTGTAATTATTGTGAAGAAAAAACGGCGGCAAAAA 45214 37 100.0 34 ..................................... CTGCTTTAATGCACGGTTCCACAAGGGCAGTCGG 45143 37 100.0 35 ..................................... CCGCTTAGTCGTATCGGTGAGGGAATCCCTCACGG 45071 37 100.0 35 ..................................... TACTTTAGCCCACACCGTCACGTAATCTACCCAGC 44999 37 100.0 35 ..................................... CCCTATCCAGTAAATTTCGACGCCGCCAAACACGC 44927 37 100.0 36 ..................................... ACGGCTATCCGCGATACAGTCAGCAGCCGCATCCAG 44854 37 100.0 33 ..................................... AACCTGGAAGTAGCGGAAGTTTGTCCGTTTGAA 44784 37 100.0 35 ..................................... ATCCCGTAGAGTAGCTTTTGGTCAGCCTCTCTCCG 44712 37 100.0 35 ..................................... TCAATTACCCCCATCAGTTCAGGTGGAATCATGAA 44640 37 100.0 35 ..................................... CAAAGAAAGTGCGAAAGGAGCGATATAATGCGGAC 44568 37 100.0 34 ..................................... GCAGCCTGAGCAGCCTGAGCGACCTGGGCAGCAG 44497 37 100.0 34 ..................................... CCGCCTGTCGTTAAAATAGCGGGCCACCACAAAA 44426 37 100.0 35 ..................................... CCCTATCCAGTAAATTTCGACGCCGCCAAACACGT 44354 37 100.0 36 ..................................... ACGGCTATCCGCGATACAGTCAGCAGCCGCATCCAG 44281 37 100.0 33 ..................................... AACCTGGAAGTAGCGGAAGTTTGTCCGTTTGAA 44211 37 100.0 35 ..................................... ATCCCGTAGAGTAGCTTTTGGTCAGCCTCTCTCCG 44139 37 100.0 35 ..................................... TCAATTACCCCCATCAGTTCAGGTGGAATCATGAA 44067 37 100.0 35 ..................................... ACCTGACGGCCGTCTTTGGTATAAGACGGGGGCAC 43995 37 100.0 36 ..................................... CAGGGAGGACCCGTGAGGATTTACCTGGATACCGAT 43922 37 100.0 36 ..................................... TTCCCCTTGGCAATCTCCACCACCTCCGCCCATATC 43849 37 100.0 35 ..................................... CCCTTCCGACCTTGCCAAGTGGTTTGACATTGCCG 43777 37 100.0 35 ..................................... CAGGAGCAGCTTGACCAAGTGAAGCGGCAGGAAGC 43705 37 100.0 35 ..................................... TGCCGTTTAGCGGTATCCGTCCTGTACCGCGCCGC 43633 37 100.0 35 ..................................... CCCCATCATCCCCTCCGGTTTGCTACCATTCCTGG 43561 37 100.0 34 ..................................... CGGCAATTGCAGCCCACGTTACCGCTTATGCCCG 43490 37 100.0 38 ..................................... TTGGGAGGTAAAGAAAATGAGATTAAGTAAACCAGCGC 43415 37 100.0 35 ..................................... CACGTGGCTGTAATATCGGCCCAGTATTTTTGGAC 43343 37 100.0 35 ..................................... AGGAGAAACTTTATAAAAAATTCCGCCACTGCTTC 43271 37 100.0 34 ..................................... CAAATTGTGTAGGTCATTTTTGATTGCCTCCTTT 43200 37 100.0 34 ..................................... CAAAGGCGGCTGACCAGCTCTAACTTTCTTTCTT 43129 37 100.0 34 ..................................... CAGTTTGGGATATCCTGGATAGCAACGGCAATAT 43058 37 100.0 34 ..................................... TAATTTACAGCGGCCTACGAATCAATGAGATGCT 42987 37 100.0 38 ..................................... AAAAGTGTGCCCGAATCGCGGGCGTCAGTTCCCGCCAG 42912 37 94.6 0 .............................G....G.. | ========== ====== ====== ====== ===================================== ====================================== ================== 135 37 99.9 35 GTTGCGCCCGGCTCCCATGCCGGGCGAGGATTGAAAC # Left flank : TCTATACCCGGTACTTTCCTTATGTGTGGTGTAGGGAACATGTATATCTTAATTACTTATGATGTTTCTACAGAAACAGAAGCAGGCAAAAAACGCCTGCGTAAAGTTGCCCAGGTTTGTAAAGATTTTGGCCAGCGAGTGCAAAAGTCCGTTTTTGAGTGTTCGGTCAACGAAACTCAATTTGAACAGTTAAAACACCGGCTTTTGCAGTGTATTGATGAAAAGAGTGATAGCCTGCGGATTTACCGGTTGCGCGAACCCCCGAAAAAATACATCCAGGAGTATGGCGTTAACCTTACGATTGATTTTGACGCCCCCCTGGTTTTGTAAACCCGCGAACATATAGCAAAGGGTAAAAGACCGGAAGGTTCGCGATCCTGGGGAATCAAGACCTGTAGCTAATTTTAGAGGTGAAGCATAATGGAGTATTCTAATTCAGTCATCAGGTTCGCGCAGAATAGTAATATAGGGGTTGTCCGCCAAGGGTTTTAGCGCGAGCT # Right flank : TCGGCTCCCCGGATGTCGCGTTTTCATGCATCCGAGGTCTTGAGGCGGAGGTAGCTGCGCTCGATGATGTGGGCCGTGTATTTTTTGGGGAAGTGACTGCTACCCTTCAGGATATAGCTGGAGACGCTGGCGAGCAGGCGCATGCATCCCATAAACACTGCATGGGGTAGACGCCAGGGGAACAGGAGTATTAGCCTCCAACATAGCCCCGGTCTGAAATACTTTAAGCATTTCCCGTACCTTAAAAGAATAAAAGAAACAGACCTTATGATGGCTAACCAGGACAGTGCAGAGATGATTATATTATATTGTTTAACGAATCGCGAACCCCTCGGGGTGAGAAACGCACCAGGTGCTACCGATCCATTTACCGGATCGGCCAGTAAAACGGTGAGCTAAAGTTACTAAAGGTAGGAAATACATGTAATGATTTTTCAAGATCACGCCAGCGAAACATCGGCTGCCAGCACGCCAACGATCCTCCCGCTAACGTCCCGTAT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGCCCGGCTCCCATGCCGGGCGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCGGCTTCCATGCCGGGCGAGGGTTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-16.30,-17.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //