Array 1 25201-22590 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGETW010000008.1 Thiomicrorhabdus sp. 6S3-12 scaffold_8_length=152057, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 25200 32 100.0 34 ................................ CTCTAAGCCAGCCGTATAATCTGAATCATTTTGC 25134 32 100.0 36 ................................ CCTTGACGGATGAAATCGAAAAAGATCCTGAATTAA 25066 32 100.0 34 ................................ ACCAATACCGAGCCCAGCCTATGCTTTTGAGCAG 25000 32 100.0 34 ................................ GTGAGAAGAAAGAGAGGGACGGTAACCTTGATCC 24934 32 100.0 33 ................................ GATTGTCTATGCCGATACCAATTGCACGGCAGA 24869 32 100.0 33 ................................ GCCTGATCGACTCTGGCGCCATCCCGGTGACTA 24804 32 100.0 33 ................................ AAGTTTAGAGATCACACCATCAGCCAAACGCAT 24739 32 100.0 35 ................................ TGTCAAATCAGCATATAGAGGAGAGCCAGGGCCGG 24672 32 100.0 34 ................................ AACGTCAATCAGTTTGGGTCAGGCCGGATTCTCT 24606 32 100.0 34 ................................ CAGTTATCGTGATAAGCCCGCTTTTTAATCCCGA 24540 32 100.0 35 ................................ CCGCACCGCGGCATCCATACGCGACTCAAACGCCG 24473 32 100.0 33 ................................ CTAAGTAGTTTGTTACTTATCTCTATTGTTGCA 24408 32 100.0 33 ................................ ACGTTTTGAGTCAATGCGAAATCCAGATCTACC 24343 32 100.0 36 ................................ GCCGTTGAATTCGAGCAGGTGGCTGGCCCCGATCTG 24275 32 100.0 34 ................................ TAGAAATTCTGCAAATGCTTTTTGCGAGAGAGTT 24209 32 100.0 35 ................................ AAAAACGCGTTCTACGCGACCGGCGGCGTGTACGA 24142 32 100.0 33 ................................ CTCATTCTGTCCATTCATCAAGAGGTGTGTTTG 24077 32 100.0 34 ................................ ATAAACTTCCAACCTGCTTGGGTCGCCAGGTACA 24011 32 100.0 35 ................................ TCAAACCGAAGAAATCAATCAGCAAACCAAAGAAA 23944 32 100.0 34 ................................ CTATATGGGAACGGGGAATAAGTTAAGAGGTAGT 23878 32 100.0 35 ................................ TCGTCTGTCCGGTGCGCGGTGTGCGATGTGGTACC 23811 32 100.0 34 ................................ CCGCCATCTTTCGGGTGCTGCTTATAAAAGTAAT 23745 32 100.0 34 ................................ TTGCCGACACCATTCAGAACATGCGCGCTTTCGG 23679 32 100.0 35 ................................ ATTCTGTCTCTGGCAGCATTAAATGCGGCTAGAAT 23612 32 100.0 35 ................................ AAATCCAACAGGGTATGCAGCAACTATGCTAGTAA 23545 32 100.0 34 ................................ AATATAACGAAACGACATGTGAAAGTCAGTGGAT 23479 32 100.0 34 ................................ TATTAATCCAAATCATCAAGGGGAAATAGCATGG 23413 32 100.0 34 ................................ TTCACCAGCACCAAATTCTAAATTTGCTGCCGAT 23347 32 100.0 33 ................................ TTCCCCGCGTTTTGCGGCTTCTACCTTTGCCAT 23282 32 100.0 34 ................................ ATTTCAGCAGCATAAGGGCTGCCAAGCTTCCCCA 23216 32 100.0 34 ................................ TGAAAAACTAGTGCTTTTAAGCCTGGCTGATCGT 23150 32 100.0 33 ................................ GAGCGTACCGACCGGGAAAGTGGCTGCATCCCA 23085 32 100.0 34 ................................ CGAATAGCATCCTAGTGACGTGTGAAGATCTAAC 23019 32 100.0 34 ................................ AAGAGCATTAGAAGGTGAAAAAACCAAGGAGCGT 22953 32 100.0 34 ................................ CCGCCAATGATGAAGCCCGTGTCCAGAATGTTAA 22887 32 100.0 34 ................................ ATGAAAAGCTGAAAATCACGCACATCGACACTAG 22821 32 100.0 36 ................................ ATCAACAAAAAACGGAATCAGATCACCAGCATTAAA 22753 32 100.0 33 ................................ GTCGGCATGGTCGAAAACGGCGACGTATAGGAG 22688 32 100.0 35 ................................ AGAAATGCCGAAACCAAATGAACTATGTGAGCACA 22621 32 93.8 0 ............................G..T | ========== ====== ====== ====== ================================ ==================================== ================== 40 32 99.8 34 GTCGCTCCCCACGCGGGAGCGTGGATTGAAAC # Left flank : AATTACCTATGATGTCTCTTTTGAAGATCCGGGTGGTCAAAGGCGTTTGAGGCATATTTCCAAAGCGTGTTTAGACCATGGTGTTCGGGTACAGTATTCCGTTTTTGAGTGTGAATTGGAGCCGGCGCAGTGGGTCGTTCTAAAAGCGAAGTTGTTGGAAATTTATAATGAAGAAACCGACAGCCTTCGGTTTTATCTGCTTGGCGCACGATGGCGCAGTAAGGTCGAACACTTCGGCGCTAAAAAGTCATTGGACATATTCAAAGACTGCTTAATTGTGTAAAGTTAGTGATACCTTTCTGTTTGGAACTATTCCAGTAATCGCTAACCCCAAGTGCTCTTTAAAAACTTAGAACCTTAGCGATATATCTCAAATACCTTTCTATTCTGGCTCTAAGCAATTCTCAATGTTTAAATTTGCTAAAATGATAAGGCTTATTTTCAAGGTTAGCGAAATCCCTTCTAAAACCGTTCGGTTTGCTGGGCTTGAACTATAAGCA # Right flank : AGTTTGTTTTTCACTGTCTCGGTAGGCCTCTTAGGTCGCTCTTCCCGCAGCTGTTTGGATCAGCGTTTTCATGACGTTGTTCAGCTTGTCGAGATTCGGGCAGTCGCTGATTTGGTGTCTTTCGGCGAGATAGGTCAGGTCGTTGAAGCTTAACCAGACGGAGCCGTTTTCGTCTTCCCAGGCAAGGGCCTTCAAAGGGAGATCCAGGCCGATAACTTGTGTGCATTCCATTAAAGGGGTTCCACCTTGCGGGCTGCCGAAAATAAGCAGTTCCGTAGGACGCAGTTCGGAACCGATTTTTTGGGCTCCGGCCGAATGGTTGATGCGGGCAAAGATGTTCATCTGTTTTTTGTGAACTTCTCTTTCCAGATTATCTATGGATTCGGCGACTGAAAAGGCACTGGGAATGGTGATAACGCCGTTTGGTTGCTGTGTCTCAGTTATGGTGGTCATGTTTTTTCCTGATATTTATTGGTGCGGTTTAGGCTGTTTTTCGGTAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCACGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCACGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //