Array 1 35116-37523 **** Predicted by CRISPRDetect 2.4 *** >NC_009468.1 Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35116 29 100.0 32 ............................. CCGCCTGGGAGGATATGGAGCGCTGGATTGAT 35177 29 100.0 32 ............................. GCGGCGGCGCAATACTACGCAGCGGTGAAAGC 35238 29 100.0 32 ............................. CGAAAATGGCGTTCTGGGAGGCGCTGACGAAT 35299 29 100.0 32 ............................. ATGTGGTGGCAAGTGACGGGCCGAGTCTGGAA 35360 29 100.0 32 ............................. ATGCGCAAGGCGCGCAAGCGCAAGGGCAACAG 35421 29 100.0 32 ............................. GTCATTGATCTGTCGCCAGTGGCCGTCGTCCG 35482 29 100.0 32 ............................. CTTCGCGCCCTGATCGACATGCAGCGCGAGGT 35543 29 100.0 32 ............................. ATCTCCTTGTCTATCTAAAAACTAGCACAGAG 35604 29 100.0 32 ............................. TTTTTTGAACAGCCGGAATTGATTGAACAGTT 35665 29 100.0 32 ............................. CGAATGAGGAATTCGCCGCGTTCTATACGCTC 35726 29 100.0 32 ............................. TGTCGCAATCCGGAGTCGGCTCGCTCCGCCAT 35787 29 100.0 32 ............................. GGGTATACGTGCTACCGGCGGGGGCTGGAGTA 35848 29 100.0 32 ............................. TGGCCGATGCTCGCGCAGAAAGTGGGCGTGTG 35909 29 100.0 32 ............................. CCGTCAAATCGATGGAGCCCGGTCACTGTTGT 35970 29 100.0 32 ............................. TAAAGCGCGGCGTCCCCCCGCGCCGCAAAAGC 36031 29 100.0 32 ............................. GAGCGCAAGCACCTGGCGTCGGAGATTTGGGC 36092 29 100.0 32 ............................. GGTGGAAGATGGTTTGTCATTCGCAGAGCCCA 36153 29 100.0 32 ............................. CCGGAAGGGACGGGCTCGCATGCCACGGGCAC 36214 29 100.0 32 ............................. GCAGAGGCAGCAGAGAGGCGATGCACCGAATT 36275 29 100.0 32 ............................. GATATCGTTGCCAGACGGCGCACGCTCGCAAT 36336 29 100.0 32 ............................. ACAGACCAGAGGAGGCAAGAGAGCGCGACAGG 36397 29 100.0 32 ............................. ATCGTCGATCTAACGACACCGCCAACGATGTT 36458 29 100.0 32 ............................. GGCGCCAACGGTTGCGTCTTGTTTCTCGTCTA 36519 29 100.0 32 ............................. GCGGACCCGCTATTACTGACCTGGCTCGATCG 36580 29 100.0 32 ............................. CGACGCCGGACGCTCGCGAAATCGCCTTTGTG 36641 29 96.6 32 ......T...................... ACGCCGGTTCGCGGGCGCACAGTGCTTGTGCA 36702 29 100.0 32 ............................. CTCGCCGGGCTGTGGAAGAAAGCCGGCCCCTG 36763 29 100.0 32 ............................. TCGTGCAGATCGTGGTTGACAATCCAGGCAGC 36824 29 100.0 32 ............................. CCGTTCGTCTGGATCGTAGATCGCGAAATGAC 36885 29 100.0 32 ............................. GATTGTCAGGTAATCGCCGAGCGTCTGATAAA 36946 29 100.0 32 ............................. GCGCTTCGAGCGCCGCCGGGCCACAAGGTTGT 37007 29 100.0 32 ............................. GTGCGGTTCTGCACCGGGCCGAACGTGGCCGC 37068 29 96.6 32 ...G......................... TCAGCGTATCGCTCGCGGCGGCAACGTGGGTA 37129 29 100.0 32 ............................. TTTACGTTGTATTGGGTGCGGCGAGACGGGCA 37190 29 100.0 32 ............................. TCCTGGGTGAGCGAGACGGGCACACTCACGGG 37251 29 96.6 32 ............................A TCCGGCATCGTTTCCGCGCCGGCATTCACGCC 37312 29 100.0 32 ............................. CCTGACACCGGCGACACGGCCCTCAGCCGCTC 37373 29 100.0 32 ............................. AACGTGACAACGCCCGTCGCCTGCGCGGTGAG 37434 29 96.6 32 .C........................... ACGCGGGGGCTTCGATAGGCTTGGTAAGCTTC 37495 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 40 29 99.7 32 GTGTTCCCCGCAGGCGCGGGGATGAACCG # Left flank : ACAAATGTACTCGCACGCATCATTCCCGCTATCGAGGATGTGTTGGCAGCCGGCGGCTTGGCAGTGCCAGAGGCGCCCGAAGAAGCGATGCCCGTTGCTATACCACCACCGGAACCGACGGGTGATGCTGGTCATCGTGGTTGAGAACGCGCCGCCGCGTTTGCGAGGCCGACTAGGTGTCTGGCTTTTGGAAGTTCGAGCAGGCGTTTATGTAGGAAACTATGGGCGCAAGGTTCGCGAGATGCTTTGGGAACAGGTCCGTGGCGCCATTGGTGACGGCAATGGCATTATCGCCTGGACTTCTCCAAGCGATGCTGGGTTCGAATTCGACACCTGTGGTAAGAACCGCCGAGTGCCTGTCGATCTCGATGGATTTTGCCTTGTAGCCTTTACGGAGGAGGCGGAAACTGCTCCTCCCTTACACACAGGCGAGCCCCGCCACCGTCGGTAGTTCTTTGACATTGTGAATTCTTTAGTTAAATCAGATCTTTACAGGAAGA # Right flank : GTATGACCTGCAGTCGCTCTACGGCCGAACCGCGTTTCCGCGCAGACGATCGCCTGGGCCGGACGCAAGAGTGGCGGAGGCGACGACAAGCCTGACCCGCAACGACACTGCCCTCAGCCGCGACGACAGAGCCACACACATAATTCAGTTTCCGAACCGCGTTTCCCATGCGGACGAGCGCCTCGGCCGGGCGCACGAATGACGCGGGCGACGACAAGCCTGACCCCGGCGACAAGCCCCTCAGCCATACCGCCCGGGCCAGCTCATAATCCAGATCCAGAACCGAATTTCCCATGCGGACGAGCGTCATGATTCCGAGAGAGCACGCTCGCAAAATTCGGAATTTTCAGGACGGTCGGATCGATAAACGATGTGATCGATAATGGCGTCGCAAATTATGAAATAAGGTGGATATTCGACGGCTTCGTTGTCTCTGGCGTCGATCGCATGCTGAACGTCGATGCGGTGCCAATCTATCAATTCGTCACTATGACTCGAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGGCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAGGCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 25677-25888 **** Predicted by CRISPRDetect 2.4 *** >NC_009470.1 Acidiphilium cryptum JF-5 plasmid pACRY04, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25677 29 100.0 32 ............................. CGCCTCGGCCAGTATGTGATCGCGGCGATCGT 25738 29 100.0 32 ............................. CTGAACATCATAGACTTTCACCGTCACCGAAA 25799 29 100.0 32 ............................. AAAGACGCCGGCAATTCAGCCGCCGCTCATTG 25860 29 89.7 0 ............T...........C..T. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 97.4 32 CCGTTCCCCGCGCACGCGGGGATGAACCG # Left flank : GGATCTGAACCTCGCTGGTCTGATGCGTGCCGGCGACCGGCGCGCTCAGGGGCGCGGCATGCGCCGCAAATGGCGCGATTTCTCACCGGGCAGGCTCGTCTCGCTGATCGAATGGAAATGCCAGCGCGAGGGCCGGGCCTTCGCCCGTGTCGATCCGAGAGGAACTTCGCAAGAATGCGCTGGCTGCGGCTCTTTCGTGCCGAAGACGCTGCGAGACCGGATGCATCGATGCGAAAACTGCGGAATCGTTCTCGATCGCGACCATAACGCGGCCTTGAACGTGTTGAACCGGGCCGGGTGGGGTCCGGGGGGCGCTAATCCTGATGGCAAGGTCGGTAATCCTGCCGATCTGGTGCGGGATTGCCCCGGAAATACGGCAGGGGATGACCCGGCCGGACCACGGCGAGGTGGCCTTGCCACCTCCCTTCATCCTACTACGTGCAATCGGTGGAATGGCGCCTATGGAAACTCTTGTTCCATATCATATGGTTACAGGAAGA # Right flank : GAAATATGCCGGCGGTTACGTCAGCTCAGATCAGGTGTGCGGCGACCAGCACCGCCAGAATCGCACTAATGCCGCTCAAGACGGCGCCGCCAGCAGCGATGATCGCCGGCCAGTTCGTGTCGTTCCTGTGTATGGCCGCCCTGTCCCGGGCCGCCTGGGCGAGCAACGCATCAATGCGCGGCCAGCTCTCCTCCCGCATCCGCCAAATTCGTTCATGCATCTGGTCGAACCGCGCAATTTGCTCGCGCAGATAAAGGCGCTCCGCGTTCTCGTCAGGATTGCTTGCCATCATGGATTACAGGGGCTGCCCGTGAAGTGAACTCTACGAGACATCAGCAATGCCCACAGTCCGAAAACGGGCGCCGCCAGACAGGCATGTGACCAGGTCGGGTTTTGCATCGCTGACGGTGTCCTTCAATGAAATGTCGAGTTCATACGCAACCCTGTCCACCTTGCCCGATGAATGAAGTTTCGGGACAATCAATAGTGGCTGGGGACAG # Questionable array : NO Score: 5.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCGCCCGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //