Array 1 173281-174832 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTFF01000004.1 Escherichia coli K71 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 173281 29 100.0 32 ............................. AAAACAGCCTTTAGATTAGTACCTGACGACCG 173342 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 173403 29 100.0 32 ............................. CGGCTTGTTTAATTGCGTGGAACGTCTCAATT 173464 29 100.0 32 ............................. ACGGCGTGGATTGAGGGACGGGTATTTGGTCC 173525 29 96.6 32 ............................T AGATCGCGCCACGAGGAAACGAATATGAACGG 173586 29 100.0 32 ............................. TGCCGCCAGGCCAGCGACACATCAGACAACTG 173647 29 100.0 32 ............................. GTCTGTGATGGCCTGCTCGTGAGTCCGCGGCG 173708 29 100.0 32 ............................. TTTTGATTTCATTAACGGCGCTCCCCATATTT 173769 29 100.0 32 ............................. TGCGCCGTAGCGTGTCCACCTATTGTAGTAAA 173830 29 100.0 32 ............................. ATACAAACGCGGTGTTTATCAATATGAATTTT 173891 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 173952 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 174013 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 174074 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 174135 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 174196 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 174257 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 174318 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 174379 29 100.0 31 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTT 174439 29 100.0 31 ............................. ATTTGGGGTATGAGAGCGCCGAGCCGTTCGG 174499 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 174560 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 174621 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 174682 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 174743 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 174804 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 190334-190972 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTFF01000004.1 Escherichia coli K71 contig4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 190334 29 100.0 32 ............................. CGACAAAATTCTCAAAACTCGATCAGGAAAAT 190395 29 100.0 32 ............................. CCACCGTTTTCGCCCACCAGGGCGCACAACCC 190456 29 100.0 32 ............................. GAAAAAGAGAAGGTAGAGAAAGCGGAATCTGG 190517 29 100.0 32 ............................. CAGGTCTATCGGGCGATCAATAAAATCGGTCA 190578 29 100.0 32 ............................. GCGCACCGTTGCGTCGAAAAGGCGCTGGAGAT 190639 29 100.0 32 ............................. TACGCTTACACAACGGGCGAATATTTTAACGG 190700 29 100.0 32 ............................. GAACCCAATAGTGAAATACAGCATCATTTTTT 190761 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 190822 29 100.0 32 ............................. GGGCAAATATAAATTCCAGCGTGCTTCATGAA 190883 29 100.0 32 ............................. CTGCGTAGCGACCTTTGCTCTCAATTTCGTTG 190944 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 100.0 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCTGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAACAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAATCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAGGTTATGTGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCCAACCCATCAAGACGCCTTCGCCAACTCTTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCAAACCTGACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCAGGATTGGTCGTCGCGGCTATTCCCTGACTGCGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //