Array 1 260876-261819 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTPM01000002.1 Escherichia coli strain MOD1-EC5447 MOD1-EC5447_2_length_374904_cov_102.139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 260876 29 100.0 32 ............................. CCGCGCCAATACTTCTGGGGCTATCAATCCCC 260937 29 100.0 32 ............................. AAACAGGCCGGAGATCAGTTTAATACGCTGAT 260998 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 261059 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 261120 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 261181 29 96.6 32 .......A..................... ATTCTTGATCACGCTTTTACCGAAGTAATGGT 261242 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 261303 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 261364 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 261425 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 261486 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 261547 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 261608 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 261669 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 261730 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 261791 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 277321-278447 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTPM01000002.1 Escherichia coli strain MOD1-EC5447 MOD1-EC5447_2_length_374904_cov_102.139, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 277321 29 96.6 32 ............................C GACTTTGCCCGGATAAGCAATGGCGATACGTC 277382 29 100.0 32 ............................. CAAAAAAATAGATTGGAAAACATTTAGATTCA 277443 29 100.0 32 ............................. TGACTGCGGTTCAAAATCTCCGGCACACGTCC 277504 29 100.0 32 ............................. CCAGCCCTTGTTAACGTCTTCGCCGTTCGGGT 277565 29 100.0 32 ............................. GCCGTCATTGCCCGTTGAGATACCGCCCGGAT 277626 29 100.0 32 ............................. GCAAGGCGAGCTATCGCGAAATCGCAGCCCGC 277687 29 100.0 32 ............................. CACCACATGAACCGCGACGCAGCGATTCACCG 277748 29 100.0 32 ............................. GTTATTTTTTCACTAATTTCGGTTAGAGGGAT 277809 29 100.0 32 ............................. GGGGATTCGCGTACCTGCGCGCCAGTTCCCCG 277870 29 100.0 32 ............................. ATACCCCAGCGTTTCGTTATATGACGGAAGAT 277931 29 100.0 32 ............................. GGATTTGCATTAACGCGGCGTGAACATTATTT 277992 29 100.0 32 ............................. GGGATGAAATTGAACTTCCAGGCGACCGACAA 278053 29 100.0 32 ............................. ATTGATAACTCGCGCTCATCCATTTTGAATTA 278114 29 100.0 32 ............................. GTCTGTGATGGTCTGCTCGTGAGTCCGCGGCG 278175 29 100.0 32 ............................. TAAACACAAGAAAAGGGCGGCACGGAGCCGCC 278236 29 100.0 32 ............................. GATTTTTCGCGAACTATCCCGGCGTAATGCGG 278297 29 100.0 32 ............................. GCATATTTCATGCAGCGTTCTGAATGAGTAAG 278358 29 100.0 32 ............................. GCGTGGCGCGGGGCGTATTCCCCGGCGAGTAA 278419 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGAGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCCGGGAAGGCAGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //