Array 1 35-1123 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWB010000010.1 Listeria marthii strain FSL L7-0530 NODE_10_length_6388_cov_43.209792, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 35 36 100.0 30 .................................... ATAAATTACGTGTTATTACTAAAAAGTCTA 101 36 100.0 30 .................................... TGTTTCTTTATACATCGCTCGAACTTCGTC 167 36 100.0 30 .................................... TTAAGATGGCAGTAGAAACATTGGAAAACT 233 36 100.0 30 .................................... TTTCATTAACAGTTATATTGCAGTCATTGG 299 36 100.0 30 .................................... CTATCATCAAGTTCTTCTTCCTCTTCTTGT 365 36 100.0 30 .................................... GTGATGCACATTTTCAGAGGTCGCATAGCA 431 36 100.0 30 .................................... GATTTGACCCTACTTCATTTTCAGAAACGT 497 36 100.0 30 .................................... TTAAGCCTCCTAGTTTATTAACGATACTTT 563 36 100.0 30 .................................... CGAGGCGATTGCCCGTGCGGTAGACCTGTC 629 36 100.0 30 .................................... ACCATTTTTCATTGCCTCATACAGTGGAGT 695 36 100.0 30 .................................... CATGAGCTGACTATTCTCTTCTGCTGAAAC 761 36 100.0 30 .................................... AAGATATTAATTTTACTAAACGTTCTATAA 827 36 100.0 30 .................................... GCCAAAATCATTGCATCCTCGATCCACATG 893 36 97.2 30 ...................A................ GATTAAAAGTTTAGAAGATATGTGGGGGAT 959 36 100.0 30 .................................... TTTTTGCGTTCGAATTTCGAAGTGTAAATG 1025 36 86.1 27 .........T..A........C.......TT..... TATGTTTTCCCCCTTTTGCTAACAGGG 1088 36 77.8 0 A.........C.A............A.C....T.TT | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 97.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : AAACCTTTTTGGCATTGTCGAAAAAGCTGTTATTG # Right flank : TAGAAACAAAGGTTTCATAAATCAATCCTAGTAAAGTCTGAAAAGGAGGTAAACCAACCACATGACGCAATATCACTACCTCGCTTCAAAGTCGCTCCTACAAAAAAATGAAGATAAGCTGGCTTCCCCTTTCTTCTATATAAATGATCTAGATTTCTTAAGCTTAAATTTCGAAGCAAACATTGACCGTGATACAAATGATTTATTCTCCTATTCAATACACTTCAACCGAGCTTGCAAATTTCAAATTGCCATAAGTGAAGGGGAATTACCGTTAAAAGACGAAGTGCAAAATAACAATTACGAATCTAAAAGTTTAAAAATCTTATAGGATTACATTATAAAAGCGAGTAAAGAAAGTGATACACTTGAACTATATACTTCGTGGAACGGCGAGGAGAATCTTCCTTTAACAAATAAAACAGAATTATCCATAGAGAATTTAACTCTTGAAAGCTTGATTTTGAGCGACAGAGAACTATTAATTATTAAAAATAACA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 476484-477245 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWB010000004.1 Listeria marthii strain FSL L7-0530 NODE_4_length_477245_cov_33.862468, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 476484 36 100.0 30 .................................... AAAATATGGTATTTGCAATAGCAATGTACG 476550 36 100.0 30 .................................... TCAGGTGTCACCCTGTATTCTTTAGCATAG 476616 36 100.0 30 .................................... TGATAACTGTTTTCAAAACTATAAGCAATT 476682 36 100.0 30 .................................... AGCATTCTGACGTGGTTGCAGACTCGGCAG 476748 36 100.0 30 .................................... TGATAAAGTCTTTAGCCGAACCGATTGGGT 476814 36 100.0 30 .................................... ACTCAAATGGTCTTCTAAATTTTTCAATAT 476880 36 100.0 30 .................................... AAAATATGGTATTTGCAATAGCAATGTACG 476946 36 100.0 30 .................................... TCAGGTGTCACCCTGTATTCTTTAGCATAG 477012 36 100.0 30 .................................... AAAAATAAATCATTCTATAACACCGATGCG 477078 36 100.0 30 .................................... TGCGATTTGCGGGAAAAAGCTAGGACTATT 477144 36 100.0 30 .................................... CTCCATATGTGATGTTACATATTCTTTTAT 477210 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 12 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGACAAGTTGACTGCAACAATTAGCGAGTTAATAGGCTATGAGCTATTGGAACATGAACTGGATTTAGAAGAAGATGAAATTACAGTTATTGAATTATTTAAAGCGTTAGGAATAAAAATAGAAACTAAAAGCGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTCTATAAATATTTATCAAAGAAGAAGTTGCTAGTTTTTATTAATGTATGTGCTTATCTTACAAAAGAAGAGTTGTTAGAATTAAGAAGGTATATTTCTTTGTATCAAGTAAAAGTTCTGTTTATTGAACCTAGAAAAATAGACGGCTTTCCGCAGGCTATTTTGGATCCGGATTATTTTCTGCATGTGGAAAATTGTGTTTAAGGACAGGTGTTCTTTGAAAATAAAATATTATTTAATTAACTTATTAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTCGGAGGATAGAAAAAAATCTACGAG # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 148971-148420 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASWB010000007.1 Listeria marthii strain FSL L7-0530 NODE_7_length_161186_cov_26.809657, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 148970 29 100.0 37 ............................. ACGATACCACGCAAATCAACAGAATTTATTTGTACAC 148904 29 100.0 36 ............................. ATATATCTTACCGTAAAACTATCTGTGTCCATGTTT 148839 29 100.0 36 ............................. AATGAGTAAACTTGCGAAAGAGCAAGAGCTCGCAGG 148774 29 100.0 36 ............................. AAAATGGACTTTAAATCAAATCCTGTGCGGATGTAT 148709 29 96.6 36 .......T..................... CTCGGTTATTGTGATGCAAAGGTGTCTATGGACGAC 148644 29 100.0 36 ............................. AGATGCTTGGGCAGCGTGGAAACAAACGGCTGTTGA 148579 29 100.0 37 ............................. CTCTTAGTTTCGCGATAACACTTTCCACTTTAGCTAT 148513 29 96.6 36 .......T..................... AGTAATGGGACATCAGAGAAAAATTATGTAGACACC 148448 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 98.9 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACTCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTACAAAATTCTAATATCAAAGAAGTCATCACATCTGACTCTATCGACCTTCCAGAAGATAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGAAGAAAACAGTAACTTTTAGAGTTGCTGTTTTTTTGTGTTTGGTTGTTTGTCGACCTTTGGTAGCATGAAAAAGGCTGGGGATCGACAGAAAGATGGGAATGGTTGGGGTGAGGGGAGTTTGGTGGTTTTTGGTTTTGAAAACCATGTAGAGAAGGATGGATTTTCATTGGTTTTCAGTCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CATTTCTATTTCCTATACAAAAAAGCCAACCAACAGGATTTAGGCTTATTTTTTATCCCCCTCGTTAACAATTCCGCAACAAACACACCAAAAACCCCCAATTTCCTCTGAACCTCCAACTACACCACACGCCCAACCTATGCTAAACTCAAAGAGAAGCCAATACCACATACATAAAAGGAGGATTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATCCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACAATCACCATCCGAGCAGATTATAACATCCCCAAAAACATGAAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGTGAAGTAGAAATTTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGACATTTCAGAACCATGGTACTTAAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //