Array 1 93250-95658 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYH01000004.1 Listeria ivanovii strain Liv13-003 Listeria_ivanovii_Liv13_003_Contig04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 93250 29 100.0 37 ............................. AAAGCTGCCGATTTAGAGAAAGTTGCCACCTTTTTCA 93316 29 100.0 35 ............................. ATTTGTCAAAATTTATAAAGCACTCATCCATTTCA 93380 29 100.0 35 ............................. CCTTTTGCGTTTGTCACTTTGTTCCCGGGCTTTGT 93444 29 100.0 36 ............................. GGCAACATAGCAACCTCCCGCTATATCATCATGTGA 93509 29 100.0 36 ............................. ATTTGTAAGCAAAACAGATAAATTAACAATGTATTT 93574 29 100.0 35 ............................. CTAGTACTCGCCTCGTAAAACTCTTGACGTGTAAC 93638 29 100.0 36 ............................. ACACTTGTAATTGAAAGTGACAAAAGGAAAGCAATT 93703 29 100.0 34 ............................. CAAATTCTGGCACAAGTGGGGCCGCATCGTCCGT 93766 29 100.0 35 ............................. ACGAAAATATCATTTTATCGGACGTTTCGTAAAAA 93830 29 100.0 34 ............................. CACATTTGCTTATTTGGTAGTCCCGCATAATTTG 93893 29 100.0 38 ............................. AAGACAAAGGATGGTGGTCGCCCCGGGGCGGTCGGATT 93960 29 100.0 35 ............................. ATGTTCGTCAATATATTTTAGTACTGTACATTTTA 94024 29 100.0 34 ............................. ATTTTACTTTCTAATTCTTCAATCGGAACACCAA 94087 29 100.0 34 ............................. CCCATTTACGGAACTATCACCGAGGAACAAAAAG 94150 29 100.0 34 ............................. ACTATTTCCGAAGCAGGTATAAAATTCCCTTTTG 94213 29 100.0 36 ............................. ATTCGTCGGGTATAACGCTAAAAAAGGTACGAAAGC 94278 29 100.0 36 ............................. ATCTTTTGTTATATCATTCAACATAATTTCATTATC 94343 29 100.0 34 ............................. TATTCGTCATATTAGCAGCACTATTCACGTATAT 94406 29 100.0 35 ............................. CGAGAACGTCACGGATTTGCAGCGGCGATGGTAAC 94470 29 100.0 36 ............................. CTCGAAGATAGATTTATGTCTGTAATTTGACCTGTT 94535 29 100.0 35 ............................. TCTATATACCCTGCGTTATCAATTGAAATATAAAC 94599 29 100.0 37 ............................. AACAGACACGAAGGGAAAGTGATTGATAGTGCGCCGC 94665 29 100.0 37 ............................. TTAATCGTTGGGGAATGAGTATTTTATAGGTTTATTT 94731 29 100.0 36 ............................. AACCGGCGAATCTTGCGATGCGGCAACAAGTTCAAC 94796 29 100.0 36 ............................. GAAAAATCGGGCGTAGTTAATTTAGTATTTGCTACA 94861 29 100.0 35 ............................. TCTTTTAACGGCCTTGCCATATCGTCACCACCTAT 94925 29 100.0 36 ............................. TTTGCTGGTACTCATTTAAAGTCATTCCATCGCTCA 94990 29 100.0 34 ............................. TCTTATGGCAAGTGTCGCTGCTTTAACACGCTGT 95053 29 100.0 34 ............................. GCTTATGCGACAGCAAGGCATAGAAGCGTATGGC 95116 29 100.0 34 ............................. TTTGAAAGCAACAGTGATAAAGTACGTTGTTAGA 95179 29 100.0 34 ............................. AATTATTACAGTTGTTGCTTCTGGAAGTAGCGCA 95242 29 100.0 38 ............................. CTTCTCTGTTTCTCGGCTCCATGTATCTTCTGCTACTC 95309 29 100.0 36 ............................. GTACCGAACCCACCTCTTGCATAGTCGGAATAGTCC 95374 29 100.0 35 ............................. TAACCAATTTGAGCTAAAAACTCAGATGGCGAAAA 95438 29 100.0 35 ............................. CAGAAAAACTTCGGACGGCTGGGAGCTACTATTGT 95502 29 100.0 34 ............................. CTTATTGTCCTTTTTGTAAAGTCGATTGATTTGC 95565 29 100.0 36 ............................. AGGCATTTCCAGCGCCCAAATAAGCACACTTGCGCC 95630 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 38 29 100.0 35 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : ATAAAATGTCACTGTACCATCTTTCTTTTCTGTTGTTTTTGTTTTGCTCGAAGTTGAATCGTTCCCACAGCCCGCAATCAGAAGTAAAGCGCAAAACATAACCATCACTTTCAAAACATTTTTCTTCATTCTTGTTCTCCTTTTTTATAAGTATTTAGCAAAATAAAAACCCAGATAAATTAGAAAAAAGCCCAAAAGCCATCTTCCAATCTATCTAGGTTATGCCCAAATTAGGTAACATTCCTGAGTGAGTTATTTGTTTATAGGATGATTTTAGCATAGATGGTAAGCGTTTACAAGTTTGTGTGTTTTCTGTCGATGTGTGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATACATTGGGAGAGAATGAGAGTGGGAGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTGAAAAGCCAATTTTGAGATAGGTCGACAAAAATAGCTTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : TACTTCTGGAATATGTGGGAAGAAAGAACGAAGTCGACATTTATATCCTCTGAACGTGCAATTGTATAATAAATCGAAGGGACTTAAATATCGAAATTGATTTTGAAAATATGGTTAATTATTGAACAGTATAATTGGCATGTGTGGAAGGGAAATTCAATACATACCAAGAGACAGATGCGTTTTTCGATGTGTGAAAATGAAAGAGTAGAAACATGGTTCTACGCAACGGATTAAACCAGATAGAAACAATTATGTCCGTTTGGAGTAAATTGAGGAATTGCAACAAAAAAACAAGGAACTAGTACAAAATTAGTTTCTTGTTAGAGTGGGTGTTGGTTATTTTGAAGGATAGAAGCTTCTAGAGACTGCAGGTCAGTCATAATTTCTTGAACAGAACGTGTTTTTAACGAAGATTCTTCTGTATTAGATTCTTTTTCTTTCTTCTTTTTGGCTTTTTCTTCGGCTTCAATATCGGAAACATTGGTTGATTTAAATTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 108019-109952 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYH01000004.1 Listeria ivanovii strain Liv13-003 Listeria_ivanovii_Liv13_003_Contig04, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 108019 29 100.0 37 ............................. TTGGTACCGTTCTGGAAATTTTTTGACGGCCTCCTCG 108085 29 100.0 38 ............................. AATTGAATATCGCAATCAAACTCTTTTATTGTAACACG 108152 29 100.0 38 ............................. ACAGAAAGCAAAAGCGAAGATGAAATCAGGGATTATTG 108219 29 100.0 36 ............................. ATCGAAAAATATAAAGCGAGTATCCAAGCAGAAGAG 108284 29 100.0 37 ............................. AACATTTTAAGAATTCTAGAAAATGACCCGCATTTGG 108350 29 100.0 36 ............................. TAGTATTTCGCGCTTTTTATTGCTGCATGTTCAACG 108415 29 100.0 35 ............................. TATCATATGCTGGGTATGGTAGACTTCTCATCAGG 108479 29 100.0 35 ............................. TAAAATCTCTTACTTCAGTCGCATTTAAATTTTCG 108543 29 100.0 35 ............................. CACAATGTTTTTATTAGAAGACACAAATACAGTGG 108607 29 100.0 37 ............................. GCTAATAATCTTGGTGGATATAAAGTCCTAGATAATG 108673 29 100.0 37 ............................. GAAGTACTTATTAAGCTCTTGAATGAAGAGTTTCCTG 108739 29 100.0 37 ............................. GTATGTATGACTATTAGTGCCGCCATCTGGTCGCATG 108805 29 100.0 35 ............................. CATAGATATCGCCCAGCTGACAAGGTGACAAGCGG 108869 29 100.0 37 ............................. AAACAAACAAAAAGTCGTTATTTTGAAGTAAAAGACG 108935 29 100.0 37 ............................. ATATTCAAGAGCTTTAGGTGTGGTTACTTTCGTGATG 109001 29 100.0 35 ............................. TTGGCTGTTTCTATCTCGTCCCATTATCAACTTGG 109065 29 100.0 37 ............................. ATGGACATCACTCGTCATCCGGAGGAATATGCTTTCG 109131 29 100.0 37 ............................. TGATTTATCGCCAACTTTCACCAAATGCGGTGGGTCG 109197 29 100.0 38 ............................. AAGTATTCAAGCACAAATTTCTCAGTATCTTCTTTTTG 109264 29 100.0 37 ............................. ACGCTACAAATAAGTATTTCCGCTCTCAAAAGGGGCG 109330 29 100.0 38 ............................. TCCAACCACGCACGGGCGAAAAGTTCTTGATTTTCACG 109397 29 100.0 36 ............................. TGTAAAAGGTCAAACTGGGGTCAAAGTGGGACTTTG 109462 29 100.0 37 ............................. CAAAGTAATATACTATGAATATAGACAAACGAAACAG 109528 29 100.0 35 ............................. GTTCTATTTTCCGATAGGTGCTTACTGGAATATTG 109592 29 100.0 38 ............................. TGGGAAAAGGAGAGGAGCTGCAAAAGCGAAACGATCAG 109659 29 100.0 38 ............................. AAAATAATTTGATTGATACGATGGGTATGCATTCAGTG 109726 29 100.0 37 ............................. GAAGTTATCGCGTCGGAAATTATCACTTATGCGCAAG 109792 29 100.0 38 ............................. GTGGGATGTAAAAACAATTTCAACTGATAAGCCAGACG 109859 29 100.0 36 ............................. AACAACTGCCCCCATCACCATTTTTTCTCACCACCG 109924 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 30 29 100.0 37 TTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : TTTAAAATTTGGTGGTGAGTATATGTATGTAATTCTAATTTATGACATTTCTGTTGAATCTGGTGGTGCTAAAGTTTGGCGCAATGTCTTTAAAATTTGCAAAAGATATTTAACACATGTTCAAAAATCAGTATTTGAAGGAGAAATAACTCCAGCACTTTTGGTGAAATTACGAATGGAGCTAGATAATTATATTCGTCAGGATGTTGATTCTGTGATTTTATTTTCTAGCAGACAACAAAAATGGCTAGAAAAAGAATTTTGGGGATTAGCAGATGAAAAAACATCGAATTTCTTTTAGCTGGTTTTTTCTGTCGCCCCCTAGTAGTGTGAAAAACACTGGAGGTCGACAGAAACATGAAATGCGTTGGTGGAGAAGCTTTCTCGTATATCTTACTTAGTTAAAATAGGAAAACAAAACTAAATTTCACCTATTTTTGTATCGGTCGACAAAAATAGGTGCGTGAGGTAAGATGGGAGTAAGGAAAGATTTTGACGGG # Right flank : TTCTTAAAAGAAAAGGATGAGCGAGAAGAGGCACTGCCACTAAAAAATGAGAATAAAAGAAAAACACTTTCGTTGGATTCATGTAAAATGAAATTAACGGAGGTGCTTTTTCATCATGTCCCACTTTTCTGAGCAGACTGATTTTATTTAAAAAATCAGTTTCTCAATAATTAGTGTATTCTCTTTTTTTCGTCCAGCGAAAACCATTTTCGCAATCTTTGAAACCGCTTGCAGTAATGGTTAGCTATACTTATAATGAACGTAGCAAATCGGCCAAAAGGAATAAATTTTCAAAATTAGCTAACTGGAGTAGTAGAAAACGGAAAAGTGGAAATATTTCGTTCTATTTTCATTGAAAACGAACAAAAAGGAGAGTTTAAGAATGAAAAAAATCGTATCAATCAGTTGTATTGTTGCAGTTTTAATGCTTCTAGCGAGTTGTGGTAGTGGAGATGCATCCAGTTCAAAAGTGGAGTTTTATACGGATAAGGGCGGAGAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 247796-248689 **** Predicted by CRISPRDetect 2.4 *** >NZ_RBYH01000005.1 Listeria ivanovii strain Liv13-003 Listeria_ivanovii_Liv13_003_Contig05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 247796 36 100.0 30 .................................... GTATAAAGCAGTTTATGAAAAAACACCAGC 247862 36 100.0 30 .................................... TATCAACGTTTGAACTCATTCAGTCGAACA 247928 36 100.0 30 .................................... TTGACATCGCGGGTGTACCCCATGCGTTCG 247994 36 100.0 30 .................................... AGAGTTTTCGCAGGCAAGTCCTCGAAGTTA 248060 36 100.0 30 .................................... TTCCGTTTTTGCGCCCGGTGCATTTACCGA 248126 36 100.0 30 .................................... ATGATTTAGTAAAAGCTATGCAGTTGCCAT 248192 36 100.0 30 .................................... GACAAAATTAGCTTGGTATGACAACAAGAA 248258 36 97.2 30 ........A........................... ACACACTGGTTTAGTAATAGCACATCAAAA 248324 36 100.0 30 .................................... TTGATTTGATTTGAGAGGGGGTGAAAACGA 248390 36 100.0 30 .................................... GCTTAGTAATGCGAATGCTAGGGCTGTTCA 248456 36 100.0 30 .................................... TGAAGCATGGATTTTTAATACAACCCAACA 248522 36 100.0 30 .................................... TTGATGAGGAAACAACACGTCAGAATAAAT 248588 36 97.2 30 ..........................G......... GTTGGCACTTCTTGGAATTACGGGTCCGCT 248654 36 86.1 0 ......A.................G.A..AA..... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 98.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : AATCAATGATTGATAAACTGACTGCGACAATTAGTGAATTGATAGGTTACGAACTATTAGAACATGAGCTTGATTTGGAAGAAGACGAAATCACGGTCATTGAATTATTTAAAGCCTTAGGAATAAAAATAGAAACGAAAAGCGATACTATTTTTGAGAAGTTAATTGAAATTGTGCAAGTTTATAAATATTTATCTAAGAAGAAACTATTAGTTTTCATTAATGTGTGTGCTTACCTTACAAAGGAAGAGTTGTTGGAATTAAAGCGGTATATTTCTTTATATCAGGTAAAAGTTTTATTTATAGAGCCTAGGAAAATAAAAGGATTTTCACAGATTATTTTAGATGCAGATTATTTTTTGGATATAGAAAATGGCATCTAAAGGTTAAATGCTCTTTGAAAATAAAATATATTTAGTTCAACAGGCATTCAAAATTGAAATCTTGCTATGGATTAATGGCGCGATTACGAAATCTTAGAGAATAAAAATTTCTGCGAG # Right flank : CAAACCATCTAATTTCGGTTTGTTTTTTTATTTACCTAGTATTCCTAGATTCTCAGCATAGCGAAATTTGAAAGTGCAAGCTGGATTTAAAACGAAGGAAGTAAATTGGCAACCAACATATTCGTGGAAACTCCTGAAATGAGACCTGGCTGAAATAGCAGATGAACGTTTTCGCAATGTTGTTACTTCTATGTCTAAACAAGCTTATTTAGCTATTGGCTCTCTTTTTTAACAAGTTTAGTTAAAATGACAAAAGTAGTTCAATTTTACGGTTAAATTAGCGTGTTTTTATGCAATTTTGTGTCATCTTACAGGAGCTGAGTGTGGTATAGTGTTATAGTCAGAGCTCAACCTATTAATAAGTGGGAGAGAAGTGGCGTAAACTTTAAATCCATTTGAAGCGTTTTATTACACATATTATAAGAAGCTATTCTACCTATTTAATAGACATCTATACTTTTCGGACGCTTATTATAAATTTTTTTAGAATAATAATGTAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //