Array 1 3850811-3849640 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGJO01000002.1 Klebsiella oxytoca strain NCTC13775, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3850810 28 100.0 32 ............................ TTATAAAAGCAGCAGCAATAGTTCTTCAGCTG 3850750 28 100.0 32 ............................ TACAAAAAAGGGCAGCCATTATCCATCGCAAA 3850690 28 100.0 32 ............................ GCGCTCACGTCGATAGTATGCAGCGGTGAGTT 3850630 28 100.0 32 ............................ TCGATGGTGCGGGATATAACGACTGTACGGCA 3850570 28 100.0 32 ............................ AATGGACGGCAGCGAGGGCATAAAGATAACTC 3850510 28 100.0 32 ............................ GCTGTTCGCGGGGCGGGTAACCCGTAATGAGC 3850450 28 100.0 32 ............................ AACATGAGCTACGGTCGTTGACCACTCAAGAC 3850390 28 96.4 34 ..................T......... AGTACGCCAATGACCCTAACTCTCCCGTTGTCAG 3850328 28 100.0 32 ............................ GATAACGATTGCGGCGGCGGAACGGGAACGAT 3850268 28 100.0 32 ............................ GATTTCCCGTGGCGACGTCAATCAATCCTCAT 3850208 28 100.0 32 ............................ CACAGCGAGCACGCCGTTCATTAAATTGAAAT 3850148 28 100.0 32 ............................ GCCATCGGTCTGTAAATCAATGGCGTATTTAA 3850088 28 100.0 32 ............................ TGGCACGGACCATCCGGCTTACTGGCTGCTGC 3850028 28 100.0 32 ............................ TTTGAAGCTGGCCGCCGCTACGCCAATACAGC 3849968 28 100.0 32 ............................ CGGCAACGCTGCTACTGCCGAACGAACGTCTT 3849908 28 100.0 32 ............................ TGCCAGCGCGAACGGAAGCATCAAGAGCATCA 3849848 28 100.0 33 ............................ GACAGCCTAGGAAATTACCGCGGGCGTTGGCGA 3849787 28 96.4 32 ........T................... TCCGATACCACGGCATACCGGCCGCAGCTTTC 3849727 28 89.3 32 A...T...................T... TGCTCTTCCTGGCGCTGTTGCTTCTGCTGTTT 3849667 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================== ================== 20 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TACAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGCAGCCCCGAGCGTCTGATGCGCCGCTCGGTGAGAAAAGGCTTGCTGACGCAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCAACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCAAATGGGCAGAAGTTTCCGCTATTTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATAGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTGACGAGTGCTAAAACAAACCATAACCGGCGCGATCTTTCGCGCCGATTTTTCAATCGCTAATTAAAACCCTTTTTTATGATGAATCTCTATCTTATTGATTTTAGATAGTGATTTTATAAAGGTCAGAAAAAGGGTTGTGAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTGTAGTGGTTAGGCTTCA # Right flank : TCGTGGCGGTTACGGGCGCAGAGTCAGGGCCGTCAAAGCCGAAGAGGGAAGCGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAATTATCCCGGCCTTCAGCATCTGGCGCGTTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACGT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3860409-3859239 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGJO01000002.1 Klebsiella oxytoca strain NCTC13775, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3860408 28 100.0 32 ............................ ATCCATCGCAAGCATCGCCACGATAGTCGTCA 3860348 28 100.0 32 ............................ TGCAAATTCACCCTCGCCCAGCGCGATGAGAA 3860288 28 100.0 32 ............................ ACAAAGAAACTCTCCCGCTTTGCCCTCCACAC 3860228 28 100.0 32 ............................ TGACAGACCAGACCGGCATCGAGAAGCGCAGA 3860168 28 100.0 32 ............................ ACTAAGTTGCTGAAGAAGCACTGGCCGAAAAT 3860108 28 100.0 32 ............................ TCTTCGCTCATCCCCGCGAACTCAATCCATCC 3860048 28 100.0 32 ............................ TTAACCTCGAGCAGCAGGCCGTCGGACCAGTA 3859988 28 100.0 32 ............................ TGGACGCCCGGCGCCGGCCATCGTGAGGATTC 3859928 28 100.0 33 ............................ GCAACGCGAACACCAACGGGAACGCGGATCAGT 3859867 28 96.4 32 A........................... ATGCGCACGTAGAACAACGGACGGCTTGCATT 3859807 28 100.0 32 ............................ ATTGATGCCGGCTCCATTGCCGTTAGCACTGA 3859747 28 100.0 33 ............................ TGCGGCTGCACGACCAGCGTCAGGGAAATCACT 3859686 28 100.0 32 ............................ CTCTTCGCGTCTGCGATACCGGAAACGGAGAC 3859626 28 100.0 32 ............................ TTCACGAATGGGTGATTGTCGGTAAGCAGGAC 3859566 28 100.0 32 ............................ ACACAGCCAGTATGAACTTCGTGCAGGCTGGG 3859506 28 100.0 32 ............................ ATTGGATAACCACCGCTATCATTGCCGTGGTC 3859446 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 3859386 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 3859326 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 3859266 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATCCATCAGGTGGTGGATAAGTTTATCGTCGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCCAACGAGCTGCTGTTTGGCTCACTGGTTGACGGTGGTCAGGTGATCGTTGAGCTGGACAAAGAGAAAAACGCGCTGACCTACGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAAATCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTAGACCCTTTTTTATTCCCCTTTTTTAAGCTATTGATTTGATTAAAGTGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGATGTCGTTCGTTCA # Right flank : AGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACTGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAACGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGGAAAAGTGTCGGGTTCAGGTCAACGGCGGCCGCGTGGAATATGTTACGAGCGAGGGAAAAGAGTCATTCTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCCGTTAGCCAGGCTGCAATGCGTGAGTTTGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCTGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 3874237-3873669 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGJO01000002.1 Klebsiella oxytoca strain NCTC13775, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3874236 28 100.0 32 ............................ TGTCGAGTTATCCGTTGCCCCGCCAAGCACCT 3874176 28 100.0 32 ............................ TGAGTCGGCGACTTGAACGAGATTTTCAGATC 3874116 28 100.0 32 ............................ AAAGAGAGAACGGGAGTTTGTAGTCAAAGAAA 3874056 28 100.0 32 ............................ AACGGCCCGGGACGCCGCTGTGGAAGGCAATA 3873996 28 100.0 32 ............................ TTCCTCGAAAATTATATGAAGTGCGGTAATGC 3873936 28 100.0 32 ............................ AGTGAGTTTTTTTCCGCCACTGTTAACGAAAT 3873876 28 100.0 32 ............................ GAAACGCGAGAACCATTTCCAGCAGTTCAGTA 3873816 28 100.0 32 ............................ TGCAGGTTAACCAGAGTAACCCATTCGGTACA 3873756 28 100.0 32 ............................ GGATGACCGATCGCATCGGCATTTTTGAATTG 3873696 28 82.1 0 ............T.C.....T.C..T.. | ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CATCAGCAGCATGCTGGTGGCGAAAGGTCTGCCGGGCTTTATCGCTTATGGGGTTTTAGCTGGAGAAGTGGTTGCGCCATGTTTGCTGATTGTGGGGATCCTGACGCGCCCTGCGGCGCTGGTGCTGGCATTCACGATGGTTGTGGCCTGGCTGATGGTCGGGACGGGTAAAACCTTCGCGCTGGATGCGGTAGGCGCGTGGGCGATTGAGAGTCTGGTCTATTTCTTTGTTGGCGCGCTGGCGATTGCCTTCCTTGGGGCAGGGCGCTATTCCATTGGCGGAACCTCGGCCTGGCGCTAAGTGCACCAGGGTTTTCTGCCTCACCCTGGCCACATCCTGTTTGCCAGGGTCTCGCCGCTCGTTTTTCAGACCCTTTTTTTGGGAGTTATTTTAAGATATTGATTTTTTAATATTTTTTATTGTTGCCTCAAAAAAAGGTAAAAGGGCTTTTTATTGATTATTGCATGATAAAACAATAAGGCAGGTGCGCCGGGCTAGT # Right flank : GAGCCATGCTACCCGACGATTACCGCGTAGCATGGCCAGCAACAACATTAAGCCAGTACCAAATCTCCCAGCGGCTGGCAGGAGCAGGCCAGCACGTAGCCTTCAGCGATTTCCGCATCGGTTAACGTCATGGTGCTGCTGACGGTATATTCACCGGAAACCACTTTCGTTTTGCAGCAGCCGCAAACGCCCGCGCGGCAGGCGACGGTAACCGGCACCTTATTGCTTTCCAGCGCTTCGAGCAGCGTGGTGCCGACCGGGGCATAAAACGTTTTCGCCGGCTGCAGTTTGGTGAACTTCAGACCGCTGGTGGCCGCGACGGCGACTGGCGTAAAGAACTGCTCTTTAAAGAAGCGCGTCGCGCCCAGCGCTTTCACTTCCTGCTCGACCAGATCCATATACGGCGCCGGACCGCAGGTCATCACGGTGCGCGATGCCAGATCCGGCACGCTTTGCAGTAGTTCAGTCGTTAAACGTCCTGCCACGAAACCGTGGGTAGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //