Array 1 45902-44480 **** Predicted by CRISPRDetect 2.4 *** >NZ_LCXS01000019.1 Streptococcus agalactiae strain B848 ctg7180000001244, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 45901 36 100.0 30 .................................... GAAAGGTTGGGCTTTTAGATGAATCCTTTT 45835 36 100.0 30 .................................... TTGGTTTTAGGTCTAACACCACACGCCACT 45769 36 100.0 30 .................................... TGTGTTAAAGTCTGCTCTATCGTCAAAAAA 45703 36 100.0 30 .................................... ATCTTTACCAAACTCGTATGAAGAATATAA 45637 36 100.0 30 .................................... TGAAGCCATCGTCTTAAACTCAAAAACTTT 45571 36 100.0 30 .................................... GCAATTCAGTTTCAGCTATCCTTGCACGTT 45505 36 100.0 30 .................................... TTTATAAGTTCGGTTATAATCAACTTTGAA 45439 36 100.0 30 .................................... TTGTGTCCTCTTTTGTAGAGTCTGTGTAGT 45373 36 100.0 30 .................................... ACAAAATAAACAAACTATTAAGACACTTGC 45307 36 100.0 30 .................................... AATCCTGTGATTGCTGCCTCCTTTTCCCCT 45241 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 45175 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 45109 36 100.0 30 .................................... AACTGTGTGATACTTTTCGTTTTTTTCTTT 45043 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 44977 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 44910 36 100.0 30 .................................... TTTAACTTCGATAAAAAATATTTGTCCGTT 44844 36 100.0 30 .................................... AGCGAAGAAATTGATAGACAAACAGTCTAT 44778 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 44712 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 44647 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 44581 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 44515 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //