Array 1 664-34 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBRS010000071.1 [Ruminococcus] lactaris strain MSK.18.54 JAFCCBCL_71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 663 32 100.0 34 ................................ ACCGATTTAGTGTATTTTAAAGCAAAAAAATAAG 597 32 100.0 35 ................................ CATCCGATCAGGATATCACGGATCTGATCTGCTAT 530 32 100.0 34 ................................ TCGGAAAATGGGTGGCTGCTGATGGACTTATTTA 464 32 100.0 34 ................................ TGTCCACATCCAACACACTGGATGTGTGTCAGTA 398 32 100.0 35 ................................ GGGGTCAGTACCTGGGCGAGTCGATCACGGCAGAA 331 32 100.0 34 ................................ TGCGGGCGAACAACTTTCAGACCCGGGCGAATCA 265 32 100.0 35 ................................ CGAGATAGATTCCAATATGCCCATTCATCCATACT 198 32 100.0 33 ................................ CAAGATTTTATTACATAAATCAAAAGAAATACG 133 32 100.0 36 ................................ ATTGCTACTGCACCAAGAACAAGACCGAGGACAGTC 65 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 10 32 100.0 35 GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Left flank : CCTGTATTTCTGTGGAAATGAGGTGGAAATATGCTGTTGTTGATTACATATGATGTAAATACAGAAAATGAAGCCGGAAAAAAGCGACTTAGAAAAGTAGCCAAACAATGTCAAAACTATGGGAGAAGAGTACAGAACTCCGTATTTGAGTGCATTGTGGATCAGGCACAAAGTGTGACGTTAAAATCTTTGTTAACAGAGATTATTGATGATAAAGTAGATAGCTTGCGATTCTACTATCTTGGAAATAATTATAAGACCAAGATAGAGCATATAGGTGTAGAACGAGGAATTGCAGTCGATCAGCCTTTATTCTTATAATTTGCAGGTGCGAGTGTCTAGCATACATAAAATTACCGGGAGACTCGCACCTGTAAAAATAAACAAATTTGAATGTGCTTTTTGTATAGACAGAGTATTTCAATAGTATACGAAAGTAAATTCAAATATATTTATAGATATTTCATAAAAATAGACAGATGTTTTTGTGGAATATTGCA # Right flank : TTGTCCACATCCAACACACTGGATGTGTGTCAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 1 6045-5221 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBRS010000075.1 [Ruminococcus] lactaris strain MSK.18.54 JAFCCBCL_75, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 6044 32 100.0 34 ................................ ACAGGAGTTGAAGAATACCGGAGCAGTCGGAGCA 5978 32 100.0 34 ................................ CATCTTGGAAATGTGGAGTGAAATAAACAGAGCA 5912 32 100.0 34 ................................ CGTAAACACCATACGCTGGATGGCTGCCTGCTTC 5846 32 100.0 34 ................................ GATTGTAAACGCTGCCTTTCCCTTCGGGCAGTTT 5780 32 100.0 34 ................................ CACGGAAGATTGCCGGAATCAACAGCAAGCAGGC 5714 32 100.0 33 ................................ GTCCTTTTGAGACTACTTTGTATGGGGTAACGA 5649 32 100.0 35 ................................ ATATTTAACAATCTGAGACAGAAAATCAAAAATCT 5582 32 100.0 34 ................................ ATATATATCATAGGAAAGGAAGGAAAAGAAATGA 5516 32 100.0 34 ................................ TTCCAACTGCTCCACGATCCGCTCCATAGGCTTG 5450 32 100.0 34 ................................ GTCAGACTCATCACTGCACCCTTTGCCCCATATA 5384 32 100.0 34 ................................ AGTTTGCATCTAGCGGAACAACTGTACCAACACC 5318 32 100.0 34 ................................ ACTTACCCGGCATCCTGTAGATAGCAGCAGCTCT 5252 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 13 32 100.0 34 GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Left flank : TTGCGGAAGTGTGGATTGAAATTGTCCACATCCAACACACTGGATGTGTGTCAG # Right flank : ATTGAGCCGTTCTACATATGGGAATCCGAGGAGTAAGTGCTATCATCATAAATATTATAAAGACTTACTGAAATCCTTGGATTTGCCTGATATTCATTTTCACCAGTTGAGAAATACCTATGCAACCATTTTGCTGAAGAATAGTTTTAATTCAAAAGGTGTTTCGCATTTGTAGGACATGCCAAGGAAATTATATCCGTAGATGTCTATGGAGATACACAGGAAATTATAGAAGACTGTCTGGACGTACTGGAACCATTTATTGAAGAAGTTATTCCAAAAGAGAGGAAAGATCAGTATTATGATTATTCAGAAATGATTGAAATAGACTTAATTCTGGAGTAATATTTCAACGCAGCATGATAAAAAATAGAATAGTAGTGATAGAAAAAAGTACAAATAAGAATCGAACGTTTGTACTTTTTTCTTGCGTTAATCTATATACTTTCAAAAATTTATTTGATATAATAGGGACTGTTACAAGAACAAACAGTAAAAAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCCCTTGCGGAAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 1 38679-39173 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBRS010000025.1 [Ruminococcus] lactaris strain MSK.18.54 JAFCCBCL_25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 38679 36 100.0 29 .................................... CGCTGGTTTAAAATTCCCGAGAATTTTGT 38744 36 100.0 30 .................................... AACCCGTCCCTGCTCTTCTTCTTTGACCAC 38810 36 100.0 28 .................................... CTGTCTCTGCATCCACAGCTTTCCCGTC 38874 36 100.0 30 .................................... AGCTTGTATCAGATGCGAATGGATCGGTTG 38940 36 100.0 30 .................................... GATGGGAGATTCTTTGTTCCTGTCAAAACT 39006 36 100.0 30 .................................... AATTATGGGTTCTATCAAGATTTCGATGTT 39072 36 100.0 30 .................................... AACCCGTCCCTGCTCTTCTTCTTTGACCAC 39138 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 100.0 30 GTTTGAGTACCATACATTTTTACATCATTCTCAAAC # Left flank : TCCGGGAAATTGTCTTCATTCACCGTAATCCCATCACTTGTATCAGTTACTGGCACTGAATTTATTTCTTTATGGTATTTGTCAAAATCAACTATTAATTTTCCACACTTTTTCTCCCACATAATTCCAATATGGTTCTTGTATTTTTCAACATAAGCACGTCCATATTTTTCAATCAGCCTTTGGCCAGCTATATTCGTTGCCTTTTTCTCGCTTATCATAACCTGTCACTCCTAATATCTCATTGATCCAATCCTGGGTGCTTGCAGTAAACTCTTTTGTATTACCTTTCAAATCTATTATAATACTTTTTTCTTGCCAGGTAAATAGCTTTAACGTCTCTCGATCTTCCGGTGACGCAATTATTTTCGTCATTGTCGGATGGGAATGAGCTGTCCACTCGTAATGATTTTCTTTTATAATTTTCCATGCATCATGCGGAATATGCCACGTTTTTGAAGTTCCATGTATAAGAATCTTTGATGATTTCCCTGTGCTTA # Right flank : | # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGTACCATACATTTTTACATCATTCTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 385-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJBRS010000042.1 [Ruminococcus] lactaris strain MSK.18.54 JAFCCBCL_42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 384 36 100.0 30 .................................... CACGCCCGATATAGGTTGCCGGGTGTACGC 318 36 100.0 30 .................................... ACTAATGCATACTTATCGCAATCAGATATG 252 36 100.0 29 .................................... AAAAATCACAAGAATCACTCCAAAGCGGA 187 36 100.0 30 .................................... CGAGATTGATTCGTTCGTAATGCTCACGCC 121 36 100.0 30 .................................... GATCTAATCTGTTTCGACCATCATTTAAGT 55 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Left flank : AACTGATCAGCAAACTTTATATGGAATTGGAAAAGCTTACTGCGGACGAACGATTCTATGTGAAAACCCAGGAAATGAAGCAATATCTGCAAGAGTATTTATTACAGCTTGAACAGGAGACAGACTATATCCTTGATCTTGCGGATGAAATAGATTTTGCCTCATTATTTAAAGCTTTTGGTATTAAATATGAGGTACTGGAAGAAAACTTCTTAGAACGTCTTGTGAGATATATGCGAATAGTGGAACGATTATTAAAGAAAAAGCTTTTTGTATTTGTTAATTTGCGAAGTTATTTATCAAATCAGCAGATTGATGAATTAATAAAAGAAGCGACGTATCAGGAAATTCAGCTTTTGTTGATTGAAACCTGTGCGAGAGATTGCATTGAGGGTGTAACAAGGTATATTATAGATAAAGATGGATGTGAAATATAACATCCTAACAGTTTGAGTACCTGTATTTTATGCGAATGATGGCATTTCATTTTTGAATTTGAG # Right flank : CGTGGTCAAAGAAGAAGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAATGATGTAAAAATGTATGGTACTCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [16.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA //