Array 1 494083-493853 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFQR010000064.1 Paenibacillus sp. UY79 NODE_113_length_593645_cov_43.989853, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 494082 32 100.0 34 ................................ CAATAGATAGCTCCATAAGTACGATTCCCGGAGA 494016 32 100.0 34 ................................ AAGCTGTAATTCAAAAATACGCTGTTACGGTAGA 493950 32 100.0 35 ................................ ACGGGTGAAGGTCTTGCCCGAGGTATTGAAGGGAC 493883 31 96.9 0 ................-............... | ========== ====== ====== ====== ================================ =================================== ================== 4 32 99.2 35 GTCGCTCCCTATATGGGAGCGTGGATTGAAAT # Left flank : AACCTACCCACGATTTTGAGGAAAGCAATCCGGCAGTTGCGACTGAGCTTTCCTGAAGTTAACGTTTTTTTGGATGATATCGCATTTCAGTCTAATGAGGCTCAAAGCTATTTAAAAGAATATGGGGAGTCTCTGAAAGAGATGCGTCCGTTTGAGCAGACCAATATACTCCAGGTGTCGAAGCGACCCAATGGTGAGACTTTTACCTATATCGGTTCCTTCACCGGATATTATTTTCAGGTGTTTGGGGTGGATACCGTCTATTTATTTTACGATCAAGAATTAAGGAAAGCGGTAATTAGCTTTGAATATTAAGAAAAAACGCGTAAACTGGTGCGAACCCCAAGCACACATAAAAATCCCGGATCATTCGCACCTCAAGCGGGACGCGAGATTTCAGGGATTTGCACCCATTTGTCTCCATTTTTTTGAGTCGAAAAAAGACATTCGCACTAAACACGCCGGGGAACCTTGCCACGTAAGGCTTCTCAATGCGCACT # Right flank : CGCAATCCAGGTTTTAAGAGGACTGAGAAGCAAATGAAGTATTTTTTAGCGGCCTGCCACTGCCTCATTGTTTCTGTTGATCGCGGCTCAGGGAAGAATCTCTAACGGTTAGATCAGCCTGCGAACCCAAGCACCGATTGGATACAAGGAATTCCAAATGAAAATCCTCAAGAACTATCTTCGATTAAAACCAGAATTTGATTTATGATACAGGTAGAATCCTAGAATTCTACTGTATTTATGGAAATAGAGAGATTTTTTCAACTTATTTGAGGAGATTCAGTATGAAAAGGCTCAAAAAGGTGTTTCAGTTACACTAAGCTCGATATTCACCCAATCATTTGTATACATTAACCATCAAACCAGTGCTTCGGGCTGGCAAAATTGAAATTACCGGCTATAACTCCAATGGTTATTATGATTATCCGACGTATTCTTATGGTCGCCATTACCGCATTAACGGAGGCAGCAATCTGATTGTGAATGGTGTCGTTAAAACA # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTATATGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-13.80,-14.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5664-4888 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFQR010000073.1 Paenibacillus sp. UY79 NODE_140_length_10822_cov_39.490482, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 5663 31 100.0 38 ............................... ATAACTGACGAAACCTTGTGATTCTGAATGTATCGCAG 5594 31 100.0 38 ............................... TATCACCCATTTCCTCATGGACACGAATGGTATTCAGG 5525 31 100.0 37 ............................... AATCCTTCGGTCTTCACAGGTCTTATAAAAGGGGGAG 5457 31 100.0 36 ............................... TTCAGGTAACGGAAGTATTTCCTTTTCGAAGATTTG 5390 31 100.0 37 ............................... TTATGTGCCTCATTAGCAAAAAACATTAATAAACACG 5322 31 100.0 34 ............................... ATGCCATAGGACGCGTCAATTCGGACCGTCAAAG 5257 31 100.0 39 ............................... AGCAGCTTCATCCCGTGTGATGTCTATCCCAGCTTCTGG 5187 31 100.0 36 ............................... TTGTAGCTGGGCTATTGTCCGGTCCCTCTCTGCAAG 5120 31 100.0 35 ............................... TAATCCAGAATAGATTTCCTTACGGTATTCTTCAG 5054 31 100.0 38 ............................... TGGACACACAAGAACTTACACGGCAGTATTCGTCGTAG 4985 31 100.0 36 ............................... AGTAACAACATGGTTTAAAGAACCTTTAAAATAAAG 4918 31 96.8 0 ..........................A.... | ========== ====== ====== ====== =============================== ======================================= ================== 12 31 99.7 37 TCGCACTCCATGTGGGTGCGTGGATTGAAAT # Left flank : AGTAGGAACAACAGATCCTACCTCTGCTGCAGCCTGCTACATCCTTAACAGGCACAGCAGTAAAGAAAATGTAACTGTCATGATGAAAAATGGATGATATGAGGGAAATCGTATTGAAGGCATGGTACAATGAAACAGGATAGGATTATTTATCCCTATATTAATGTGTTTGGGATTTGATTCCATTTTGAAGTTTAAAGTATAGACCAAAAAGAAGACAACTTGCGCTTTTACAACTTAGAAGATAACTACAAAAAGAAAGTAGAGCATATAGGGGATAAGGAAACTTACGATCTGGAAAGTGCACTGAGTTTATATGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGCAACCGAATCAGTTATCTTCAGTAAAAGTCAATGGTTGATCCAAGCCTTTTTGGCATCAGTTTTTGCGAAAATGTGAGAAATTGATATCATTAGGGTATGAATTACTGTATTTTCGCTG # Right flank : AATTTCTGTCATTAGGCAGTATGAGCATATGGATTGACGTACAGCTTACAGGAAGGATCACGGGAAATACCTTATCCAATAAGGATGGAATTCCTGGAGACGATATTGGAAATCTTCCCAAAAAAATTCCAAAAATCCTTACGTGCTTATGAAGTTAAGGCTCAGTAAAAAAGACCTGCTAACTTTTAGCAGGTCTTAAGATATATTGGAGTTATCACTTTTTTTGTTACCAATTTGGTCAATAAACCTTAAAATATTGCCAATGCTATTCCCCCTGCGCCCAACCAGTAGTCAGATGAAACCCATCGGTGCTTATTAGAAATTGTTAGTTAGCAATTGGTAACATCATCTATAAAGCTAACAAACTCTATAATGCCAAATATGATTGCATTAATGCCTATCCAAACCAATAATAACAAGAATCGAGCATGGTAAAGAGGTGTCAATCTTAAGAAAGCTTTAAAAAATACAATGCTTTATCCCTTCATATAACTAAAATC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGCACTCCATGTGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCGCACCCCATGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.70,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 151097-150393 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFQR010000008.1 Paenibacillus sp. UY79 NODE_9_length_195524_cov_44.152134, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 151096 32 100.0 36 ................................ ATAATCCAATGCAGAAAATGAAATCATCGCTTCAAA 151028 32 100.0 34 ................................ CATCTGATCAACGAACCAGTCTTGCCCGGGTGAC 150962 32 96.9 35 ................T............... ACTTGGAGAGATTACTGGAGCGCTCGGTCCCTTTT 150895 32 100.0 35 ................................ ATCCACGATCTGATCAATCTTACCGGACAATATAG 150828 32 100.0 35 ................................ TCGTATTCATCAAGATTGCTCACGATTACAGCATA 150761 32 100.0 39 ................................ AATCAAGAAGTACACGAAACGCATAAAGTGCTCACTTCC 150690 32 100.0 35 ................................ TATCGTGACCAGTGAATTAATGTGATACCACCCAC 150623 32 100.0 34 ................................ CATCACCACCAGTGTGAAATTAAGTGAATACAAA 150557 32 100.0 36 ................................ AGCAATGCTGACGGCGTGACCGGGCATGAGGGTGCA 150489 32 100.0 33 ................................ CAGTATGTTGTATACGATGAGGAAATAGGTGTA 150424 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 11 32 99.7 35 GTCGCACTCCACGTGAGTGCGTGGATTGAAAT # Left flank : CCTCCATTTTTGTGGAAGTAGGTGTTAGCTTGCTGATTCTGATTACTTATGATGTAAGCACGGTAGACAGTGCAGGTAGAAAAAGACTGGCCAAGGTTGCAAAAAAGTGTACAGATCACGGACAAAGGGTACAAAATTCCGTATTTGAATGTATTTTGGATTCGACGCAGTTCCGTCGTTTGAAATATGAATTAGAAGAATTGATAGACAAAAAAGAAGACAGCCTGCGATTCTACAACTTAGGTGATAACTACAAAAAGAAAGTAGAACATATCGGGGCCAAAGAAACTTATGATATGGAAAGCCCACTGATTTTGTAAGGTGCGAATGTGAAGCTCACATAAAAACTCCGGGTCCTTCCCACCTCGAAATTTGTCGAATAGCAATGGAGAAGCTTTCTATCCGTAAAAGTCAATAGGTAACCCAAGCCTATTTGGCATCAGTTTTTCGAAAATACATGAAATTGATATCACTTAGATATGAATTACTGCATTTTCGCT # Right flank : CCCCTGTAGCTCAACGGCGTTCAGATCCCATAAAATGCCTCTGTAATGTCCCAGAAGCCTTTTTTGTTAAGCGTATTTTTATAAAATCCAAAACTTGACGTTTTGCATTAGTATATGACATAGAAGGAGGAATCATGCTGATGAATCCGGGTGTCTTTACTTCGTGTCGAACGGGCCAGAAAAAGACTGTACCAAGTGCAGGAGAAATACGGATTTTTAACGCATCCCAAAGTGATAGAACAATCCAGAAAACTGGATCATTTACTGAATCAATACCAAACCTGCAAATCAAAATCTTAGCTCATGCGTTCTTGCGTGCTCTGAAGGCAGAACACAGACCATAATCATGTGAAATTGAACATTACATAAATTGAACATAACCATCATGTGGAGGTAACATAGTTGAAAAGAAGCATTACTCCTATAACCCCTTTCGGTTGGAAAATCAAACAAAAGCTGGCCGAGAAACAGCTTGACCAAAGCACGTTTTGCGATACATA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCACGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.40,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 161608-160493 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFQR010000008.1 Paenibacillus sp. UY79 NODE_9_length_195524_cov_44.152134, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 161607 32 100.0 34 ................................ ATCCATAACATGTTCCTCCTGCTGTGCGACGACC 161541 32 100.0 34 ................................ ACCTTCGCAATAATACTCGCTTGGCTGTTTTTCT 161475 32 100.0 36 ................................ CATATAAATCCGAAAGCATCGGTAGCACCCCGCTGG 161407 32 100.0 36 ................................ CTTTAATTGTCCAAGAAACTTTACCTTGCGTCGTTA 161339 32 100.0 36 ................................ ATCCACAATCAAAAACAGTTTCTATCCACCTGTTTG 161271 32 100.0 34 ................................ ATGACCAACCGTACTCGAATATCCACGTTAACAA 161205 32 100.0 34 ................................ CATATAAGGTACTCCCCAGCACTATCCACGCGTC 161139 32 100.0 37 ................................ TGTACTGGAACGTCCTGAGTTGGAACGCCCTGCGCTG 161070 32 100.0 38 ................................ TCCCTACTCCAGTCATCTAATAGCCACAAGATAGCCTC 161000 32 100.0 39 ................................ TTCAATCAAAAAATATACGATGCTCATAAAGTGCTTACC 160929 32 100.0 36 ................................ ATAGCAGGTTTTTCTCCGTTATATGCCAACTGTACC 160861 32 100.0 35 ................................ AGATATGCAGGCTGCCCGTAGTCTCCTGAACCGAT 160794 32 100.0 38 ................................ CCCTCATCATCACGTAGGCGTTTGATGTAGGTGGCATA 160724 32 100.0 36 ................................ AGTGAGTTGCTTTGTGGTGCTGCCCGCCTTGCGTTC 160656 32 100.0 33 ................................ CCCAGGCTACCCCAAACCAAATTAAAAACAGTA 160591 32 100.0 35 ................................ CATCCGTTCGAGGCCGCCGTTTGCTGCGATAAACT 160524 32 87.5 0 ................CC......G...T... | ========== ====== ====== ====== ================================ ======================================= ================== 17 32 99.3 36 GTCGCACTCTATGCGAGTGCGTGGATTGAAAT # Left flank : AGCACTGGTATGAAAATCAAAGCCAATGAGTGGACGCATCTGGCCTTCACGGTAGACAACGGAGTGTTATCCGTGTATGTGAACGGCAAACTTCAGTTAACAGGCGCAGGATTTCCGAATATATTTACATCCAAAGCCGGAACGTTTAGCTTAGGTGTTAACTGGTGGGACCCTGTTTTTAAAGGCGCTATCGATGAATTAAATATATTCGAAGGTGAGCTTCCTCCATCACAGTTGGCAGAGCTGGCAAAGATAAAATAAGTCCAGGCACGTATTTTCTGCCAAGTTAAAAGAACTTTGTGAAAGCAATTTTGTTCAGGTGCGAATGTGAAGCTCACATGAACTTCCCGGGTCCTTCGCACCTCAGATTTTGTCGAAAATACGTCGAAAGTGAACAAGATGTGAACGGATTGCAAGGGATTGAAGTAATAATGGATGCGTTTTGACCGAAATAACGCTAGAATATTACTTAAATGGGGAAGATTTGACCCATTTTCGCT # Right flank : CGTGGAGGGTGTAAGTGAGGGACTAAAACGTAGAATCGTCCTCTGACTAAGTTAGTGAATTGAAAATAAAGCTGAATAAATTTCAGCTTTATTTTCAGTCTATACATCCAATATGTGCCGATAATTTAAATAATATAGTTGCTAATATGTAATTCAATAATTTTAGTGAATAGATTGAGAGGATTATGAGAAAAGACGGAAGTTATGTTTAAAAAGAATGAGAAAAAACCCGCTAAGGGCGGGCTCTTCAATATAATTCTATAGTTTTCAATCCACGCCTTTCAGCGACACGCCGAGTGTATCATAAATCATTAATTTAAAGCAATTTTTATCGACTACGTTGCAAAACATAAATTTTTTTGATCTTTTGGGAAATGTTACTGTGTTTTATATAAGGCTCCTATAAAATTATATTGAATAAGATGGGCGACATTAACATTCAGTAGTTATTAGTGAATTACAAGGAGGCGCTTAAAGATGGAGAAAAACAGTAGAAAAAC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGCGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.40,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 164577-164210 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFQR010000008.1 Paenibacillus sp. UY79 NODE_9_length_195524_cov_44.152134, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 164576 32 100.0 35 ................................ TTCAAATGCACCGGGCCAAAGTTCCGTTTGCCGAT 164509 32 100.0 35 ................................ TATTAGGTATTCCGGTTGATCACGAACCTCTGCAC 164442 32 100.0 34 ................................ ACGCATAACCATAGCGTCTTTTTCCGTATAGCTC 164376 32 100.0 37 ................................ TGTCTTCCGGCGACCTAATCGGAGGCCGATACGTTAG 164307 32 96.9 34 ........T....................... CAACAGTTTCAGGAGAAGTACGGAGTGAATAAAG 164241 32 96.9 0 .......................T........ | ========== ====== ====== ====== ================================ ===================================== ================== 6 32 99.0 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AAATTCCGTATTCGGGTCAATGTCATTTATCCTGGTGCCATTTCGACCAATATTGATGAAACAACAGAGAAATCCGAAAGGTTAAAGCAGATTACCATTCCCGTTCATTTTCCCGAAGGAGGGCAGCCGCTGGCAAATGGGCCCGGTCAACCTGAGCAGGTAGCTGATTTGGTAACATTCCTGGCCTCTGATCATTCGCGCCACATTACGGGTGCGCAAATTGTGATTGATGGGGCAGAATCTTTATTGTTTTAGTATGAAAGCATTTCTATGACGGAAAAAGGATTTATGGTATTCTGATTGTAATATTTTGGTTAAGGTGCGAATGTGAAGCTCACATAAAATCCCTGGGTCCTTCGCACCTCGAAATTTTCGAAAAGGATTTTAATCAGTTGTCATTCATAAAAGTCAATCGTAGATTCAGGCTTTTTTGGTATTGTTTATTTTGAAAATGTACCGAATAGATACCCTTTTTTGGATCAATTGGGCACATTTTCGCT # Right flank : TTAAAATAAGAAATACAAATTTCAATACACCTTAGGTGGATTGTCAACAGTAAATCAGACAACTTTTTTAAGGGCCTCTTGGCGGTACTGAACAGGTTTTATGTATCCCAGTGTTCCGTGAATGCGATGCTTATTAAACCAGTTGACGTAATCATATAGTTCGATCTCCAAATGATGAAGGCTCTGAAATTCCATCTGGTTTACGAACTCGGTTTTCATGACCTTGTAGGTGGCTTCCGCTACGGCATTGTCATAGGGACAGCCTTTCATGCTCAGTGAACGACCGATCTTAAAAGTTTCCAGAAGCTCGTTCATCTTTTCATTTTTAAATTCACTGCCACGGTCTGTAGGAAACCACTGAATTTGATGCAGATCACCCTGTACTGTGGCAAAGGCCCGAGAAATCAGAGCAGCGTCCTTGTTCGGACCTGCACTATGACCGATAATCTCTCGATTGAACAGGTCAACGAGTACGCAAATGTAGTGCCACTGGTGCTGAA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 166404-165769 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFQR010000008.1 Paenibacillus sp. UY79 NODE_9_length_195524_cov_44.152134, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 166403 32 100.0 35 ................................ CCCGCGAATTGGTCGGTTTCAACGGCTGTCTGCCC 166336 32 100.0 33 ................................ TGTTATGATGGTAGTTGTCCAGACTCACCTATC 166271 32 100.0 34 ................................ CACACAAGGGCTGTCCGTCTTTAATCCTGACCAA 166205 32 100.0 34 ................................ TTGCACTCATTGTCGGCCCCATGTTGTTGTTGGC 166139 32 100.0 36 ................................ AGGCATGTCATGAATATAATATCGTACCTTTATTGT 166071 32 100.0 36 ................................ TACCAAGCCATTAGCCAAGCTGGAGACAGGACCCGG 166003 32 100.0 37 ................................ AATCATTACAGGAGCATATCCACGAATTACGCCTACG 165934 32 100.0 35 ................................ TCACATAGAACTCTTGTGTTGCATCTGGTGGTGTT 165867 32 96.9 35 ...........C.................... GCGTTACCGCTCGTAACTGGCCTTCGAGCCCTCTC 165800 32 96.9 0 ...........C.................... | ========== ====== ====== ====== ================================ ===================================== ================== 10 32 99.4 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CGGCTGTGGAACGGTACGGAGGAAATCAGCGAGTTGTTCGATCACACCTTTTCTACCGCCGAGCGCTGGTCCACCAACCGGGGATTGATCGGAGGGAAGCCTCATTGGTACGAGAGAAGCATACCCGCGGAGATGCCGATGAGATTACAGGTGTATACCGACGGTTTATCCGATTTGGACCCTATTCGCGAGCCTGTTCCTGATGAGCAGATACAAGTATTGCTCGATGCATCCCATACCGGGGGACTGGACGATGATGCTGCATTTATTGAATTGCAGTGGTAGGAAAATAAAACACGATCCTGCTGGTCCAGCAAGGTGCGAATGTGAAGCTCACATAAAATTCCCGGGTCCTTCGCACCTCGAAATTTTGTCGAAAAGGATTTAAATTGGTTGTCATGGATAAAAGTCAATCGTAGATTCAAGCTTTTTCGGCATCGTTTGTTTTAAAAACGTACCGAATAGATACCTTTTTGGGATCAATTGGGTGCATTTTCGCT # Right flank : ATCCCGAAAATGAAGTAATACTCTCTTTTTTTAAGTAAAGAAAAGAAATGGCAAATAATGCGCAAAAATGGTGATTATAAAGTATACCCTTTTGGGTAATCTTGTGAATATACAGGATACTGAAAGGAGCGATACATATGAGCTACACACCTTCAGGAAGCCCGCGCTTTGAAGGTAAAACTGCTCTAATTACGGGGGCCGGTTCTGGAATTGGTAAAGCAACAGCCATCCAAATGGCGAGAGAAGGAGCGAATGTCTCCCTTTTTGACGTAAGTAATGAGCGGATTTTGGAGACGGAAAGAGAGATTAATGCGATACGAGAAGGCTCAGCCCGTGCGTTTGATGTGGATATTGCCGACCCGGTTCGCGTAGAAAAAGCAGTTCTGGAAGCAGTTGAACTGTTTGGCGGCCTGAACATCGTTTTTGCCAATGCAGGGATTAACGGTGTGCTTGGACCGATTGAGGATTTGAGCATTGAGGATTGGCGGCAAACGCTGTCT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 52395-51498 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFQR010000087.1 Paenibacillus sp. UY79 NODE_172_length_107645_cov_51.292603, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 52394 32 100.0 33 ................................ TAAGAGTTTTCAATCCACTTCCTTACTTTAACA 52329 32 100.0 34 ................................ CAGATTATCGAAGGCCCGTTTGCTGGTGAGGAAA 52263 32 100.0 35 ................................ TCTGCCTGATTATCATAAACCCGATGATATTGGGT 52196 32 100.0 33 ................................ TTTGCCGATCCTAGTGAATCAGCGCAAAGAGCA 52131 32 100.0 34 ................................ AGCGCTGGTATAAAACCATACAGATCGTTTCCCG 52065 32 100.0 33 ................................ AATGTTGAATCTAATGATTTTGATGTTGTTACC 52000 32 100.0 36 ................................ AATTATTAAGTTATTATCGTTGATAAATGCTTCTGC 51932 32 100.0 37 ................................ AGCCCCATACGTCCACTTATCATATTGTGTGATCAAA 51863 32 100.0 35 ................................ GCAGCATCGGCGCCAACTTTAATACCATCCAAGAA 51796 32 96.9 35 ................C............... AATTCAAATCGTGGCAGATGGCTCATGAACTCGGA 51729 32 100.0 34 ................................ ATATTTGCTCATCCATATTCTCCTCCTGTTTTGT 51663 31 96.9 35 ............-................... AACCTCTACCAGTGTTGCGACTATATCGTTTTTAC 51597 32 100.0 36 ................................ CACTTGCATGCCATATTTCAATAGGCCGTAGTCCTT 51529 32 78.1 0 .........T..A.A....T.........TGC | ========== ====== ====== ====== ================================ ===================================== ================== 14 32 98.0 35 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : ACAGTTTGCAAAGCACTCAAACAGGATGTGCTTACAGCGCATCATCAGGATTATAACGGCATTATTGTAGAGCCTTATCGTAATGATATTGAGTACAAGGCTCCACGTGATGATGATTCTCCCGTCCCTATTCCATTTCTTTCAGCGTCGGCTCACTTTGGAATTACATTAACCTGTGAGGGAGAGAAGGAATCAGCTATGAAGTGGCTAAGTTTGGCAAAAACAATCCTACTCGGAGCGCTAAGAGAGGAAGGCATTGGCGGGAAGACCAACGCAGGATATGGAAGACTGTTAGAGATTGAATGACAGAATTATGAAGGTGCGAATGTGAAGCTCACATAAAATCCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGTAATTGGATCAGTTACCTTCAGTAAAAGTCAATGTTTGATTAAAGCCTTTTTGGCATCGTTTTTTTGCGATAATGTTTGGAATTGATATCATTAGGGTATGAATTACTGCATTTTCGCT # Right flank : GATCATAAAACACGTTGAAACTTTTTCAACGCCCGCCAGCCAGAAAAGAATGGAGGACACATTACTATAAGAAAACTCGTGGAAAGCTACCATTATTTCTGTACTTGTGGATCAGTAAGATGATATTGGGAAAATACTAGTTACTGTTCTTATATTTATAACTAAGCAAAAATGCGTTTTACGAAATTTGGCAGTGACAAACTATACGACATGTATTTAAAACCAGTTATCGTGTACGAGGGGAATGACGTTGTTATTGTACCCTCGTTATTTATGATAAGTGACTTTTCACGAACTTTCCTTCATCTGTTAAATAAACTAAATGTAAATTTAGAAACACGGGGAGACACATACGAAGCTTGTATGCGGGAGGATTCCTGCAAAATGGCTTCACAGTTTTAATAATAAGGTTCCTTATATGCAAGAGGAATATACAAATCGGAGGTATAGATATCACCGCTCGTCTAGGAAATTTTTATATGTAGGTGAAACCAAAACCA # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [20-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 61124-60484 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFQR010000087.1 Paenibacillus sp. UY79 NODE_172_length_107645_cov_51.292603, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 61123 32 100.0 39 ................................ TATTTTGAACAACGTGCGCACCGCTCCCTGTGCGCACGC 61052 32 100.0 35 ................................ TACACCAGCATCGGGCGTGTTTATGACTTTGTCAG 60985 32 100.0 35 ................................ ACGTTCCGGGCTTTCAAACGACATGCGGTATTCCC 60918 32 100.0 34 ................................ GAATCACGGCGGTGTGAACCACCTACAAGGCCAC 60852 32 100.0 37 ................................ GGATTGTACATCCCCAGTTTGTTCATCGCATTATCAA 60783 32 100.0 34 ................................ AACCTCGTGTAATTTCAAATACGTGTATGTCTGA 60717 32 100.0 34 ................................ TAATGTTTTCACGATTATGTTATTATGGTAACTA 60651 32 100.0 37 ................................ TCCTTTGCTTTCGAGAAATGGCATAGGGTCTTGTCTC 60582 32 100.0 36 ................................ ACATTAGGAAGTTCATCCATCATTCTCGTACGGATC 60514 31 87.5 0 .....-....T.......A......G...... | ========== ====== ====== ====== ================================ ======================================= ================== 10 32 98.8 36 GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Left flank : GCAACAGTTAGCAAAGCACTCAAACAGGATGTGCATACAGCGCATCATCAGGATTATAACGGCATTATTGTAGAGCCTATCGTAATGATATTGAGTACAAGGCTCCACGTGATGATGATTCTCCCGTCCCTATTCCATTTCTTTCTGCGTCGGCTCACTTTGGAATTACATTAACCTGTGAGGGAGAGAAGGAATCAGCTATGAAGTGGCTAAGTTTGGCAAAAACAATCCTACTCGGAGCGCTAAGAGAGGAAGGCATTGGCGGAAAGACCAACGCAGGATATGGAAGACTCTTAGAGATTGAATAACAGAATCGTGAAGGTGCGAATGTGAAGCTCACATAAAATCCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGTAATTAAATCCGTTAACCTTAGTAAAGTCAATGCTTGATTCAAGCCTTTTTGGCATCTTTTTTTGCGATAATGTGTGGAATTGATATCATTAGGATATGAATTACTGCATTTTCGCT # Right flank : ACGCAGTCACTCTATAGCTAACAAAATATCCTCTATGCCGCATTCGTCCCCTGAGAGTCTCTTTTTGTGAGATCTACAGGGGGCTTTTTTTATACAGGACTTATGAAAAATCCCATTATAGCTTGGTATTCAGTTTATGATTCTAAATATAATTTTTACTTAATTGGAATATAAGATTTAATTAAAATTTATAAAACATTATTGGGAAGAATTATCCTTGTAAAATACATACAATCATAATTATAATTAACATGATCCTTAATACCTATGTTAATCAGGTTCTTTTTTCCTATTCCATAACATGAGTTGGATTATTTTAGGGCTAGTTAAGAAGAAGTATTACAGATATAAGATTAATAGAAAGGGCCTGAGAACATGGGAGAAATTAAAGCCAGCAAGGATAGTAAGGTTGAAAATGTATTTGAACGTATTCATCAGAATTACCGTTACTTGAATCAGATGATGGTAGAAGAGATCGATATTGCTTCTGAGCATGGAAC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //