Array 1 7460-2813 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ948422.1 Streptomyces antibioticus strain DSM 40234 PRJNA299224_s001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 7459 29 93.1 32 .....T......A................ ACGCGCGTGTTGGCCAGGTTGAGGGTGATGCG 7398 29 100.0 32 ............................. GAGGAGGGCGACAAGGTGAGTGAGGCCGCGCA 7337 29 96.6 32 ........A.................... TCGGGTCTGCGCGCTGCGCTCGGCATGGGTTT 7276 29 93.1 32 ....................A...C.... GTGACCCGCCTCTGGCCCCACATCCAGACCGT 7215 29 96.6 32 .................A........... TTTGCCGAGCACTCCACGGAGCTGATCGAGCC 7154 29 96.6 32 ...........T................. ACCAACGGTTTCCTGTGTGACCTGTGGATCGA 7093 29 89.7 32 ...........GT.........C...... GCCTTCGTCACCTGGCTGCGCCGCCTCGTCAC 7032 29 100.0 32 ............................. ACCCGGAGGACGGCCGGTATCCGGCAGAGAAG 6971 29 96.6 32 ..................A.......... GGCCTGCTGATCCGGTTCGTCACCACCGGCGG 6910 29 100.0 32 ............................. TGATCGGGCTGGGGGTTGATCTTCGGGTCACG 6849 29 100.0 32 ............................. CAGCTGCTACGGCGAGTACCAGGCTCAAGGCC 6788 29 100.0 32 ............................. ACGGACCAGATCTTCCAGTCGATGACGGCAGC 6727 29 100.0 32 ............................. GCCCTCAGGCGCGGCCTGCCCAGCGTCCTCAT 6666 29 96.6 32 .............G............... CTCAACAAGGTCGGCCGTCGTCACCAGCTGGC 6605 28 96.6 32 .................-........... CCGACCTCATCGAACGCGTACCTGGCGCTGAA 6545 29 100.0 32 ............................. AAACTGAACTACCTGATGGGTCACCCAGACAC 6484 27 89.7 32 .......--....G............... GTGCCAGGCGGCCAGTGCTGCTGCCGGGACTG 6425 29 100.0 32 ............................. CTCACTTGTCCGGAGTCCAGAAAGCCGCATGA 6364 29 100.0 32 ............................. CCCCGCGAGATGGCGTACGAGCACGCATCGCA 6303 29 100.0 32 ............................. GAGCTGCACGGCAAGTACAGCCCGCGGTTCTG 6242 29 100.0 32 ............................. CCTCCCCACTTGACGAACATCGCGAGCTCCCA 6181 29 100.0 32 ............................. GCATACGAGGAAGCGCGCGAGGCACGCCGCGA 6120 29 93.1 32 ...A............T............ TCGACGATGGCCGTCTGGAGCCGGTAGCGGCC 6059 29 100.0 32 ............................. GCTCAGGACTCGTTCGTCAAGGCTGCCTAACC CGCG [6039] 5994 29 93.1 32 .......T..........A.......... GTCGTCGGCATGTACGCGGACCCGGCGAGGTG 5933 29 100.0 32 ............................. ATGGGGCGGCGATGGGGATCGTCGTACAGGCG 5872 29 100.0 32 ............................. CCGCGGGGCACGGCCAGCGCGGAGTCGCTCAG 5811 29 89.7 32 ......G........CT............ CCGTCCAGGGTGGCGCCGAGGTCGGTGGCGGA 5750 29 86.2 32 A..........T..T.T............ GTGTATCGGCGAAGGAAGGGGCCGCTGTCGTC 5689 29 96.6 32 .................A........... CAAATCCTCGGCCCGCTCGACGGATGGAAGTT 5628 29 96.6 32 ...................A......... CGCACGCACGCTGACGTGCTGGAGCGGTCTCT 5567 28 89.7 25 .G.G....-.................... TTAAGTTGGAACATTCAGGGGGCGC Deletion [5515] 5514 29 93.1 32 ...G.......T................. GCCCGCGCCAAGCTGAACGCGATGGCGGCGAG 5453 29 93.1 32 ...G......T.................. ATGGTCATGGCCGTCTGGTTCGACAAGGGTCA 5392 28 82.8 32 ...G..........T......-....TG. AACTGGGACGCGAATTCGGATCGTTGGGACGC 5332 29 100.0 32 ............................. CAGGCGTACCCCACCCGGACCGCTACCAGGTG 5271 29 100.0 32 ............................. GAGCACGGTCCCATCGTCGTCCGTGAGGGTGC 5210 29 100.0 32 ............................. TGGAGCGACAGCCTCGCCGGTGACGTGATGGC 5149 29 100.0 32 ............................. AAGCACCGCCCCGAACTGTTCGGCGGCCAGGC 5088 29 93.1 32 .......T..................T.. GTATGTCCGCGGCCTCAGGTCGTGGTTACCTT 5027 29 100.0 32 ............................. ATGGGCGGCCGGGAGTACACCGTCCGCTGCCC 4966 29 100.0 32 ............................. TAGTTCAAAACACACCAACCTGCACGGAACGG 4905 29 100.0 32 ............................. GCCGACACGTCCACGTTCACGTTCTACGAGGA 4844 29 96.6 32 .......G..................... GTCCCCGACTCGCGGAAGGCGAAGGTCCGCGC 4783 29 93.1 32 ......T.....................A GGCCGCACGTACCCGCCAGTCGAGAGGCCACA 4722 29 96.6 32 .C........................... AGAAAGGCCAGGGAGAACCAGTTCATCAGGAT 4661 29 93.1 32 .C.........T................. GTGAGCACGGCGACGTGCCGGGTGACGCGGCG 4600 29 100.0 32 ............................. TCCTGACGCGCGCCGTTGGAGTCGCGGACCAC 4539 29 100.0 31 ............................. ATCGAAAGTTGGTGCTAGCGGTGTCGACCGT 4479 29 100.0 32 ............................. AAGCGCCGCCCCGAACTGTTCGGCGGCCAGGC 4418 29 96.6 32 .......T..................... ACGACGCCCAGCCCGAACTTGCGTCCCTCGCG 4357 28 96.6 32 .....................-....... ACGATGTCACCCCTGCGGATGCCCGCGTGTCC 4297 29 96.6 32 ......T...................... ATCAACGTGGCGGCTGTCGAAACCGGCATGCG 4236 29 100.0 32 ............................. ACCCCATGGCCGCCGACTGGGACAACTGCGCG 4175 29 96.6 32 ............C................ CCCTGGGTGAGACCGTCGTCGGAGATGGCGCC 4114 29 100.0 32 ............................. GAATCGGCCCGCAACCGGCGGGAGATCGACTC 4053 29 96.6 32 ...............A............. GCCGGGGTCATCGAGGCCGCCGGCGTCCAGCA 3992 28 96.6 32 .....................-....... CCCAGTCGGCGGGCACGGACATCCGACTCGCC 3932 29 100.0 32 ............................. AACCTCGCCATCCTTACCTCGCACAGCGCCTA 3871 29 100.0 32 ............................. CCGGCCTGATGCAGTTGCGCCGTCACGTAGTT 3810 29 96.6 32 ............................A GTTCACGGACAGGCATAGTTAGGTGACCCCGC 3749 29 100.0 32 ............................. TGGATGATGGGCCTCCCGGACGGATGGGTGAC 3688 29 89.7 32 ..A.....................G...A AGGTCGGCCTGACCTGCGGAGAGGCGGGCCTG 3627 29 93.1 32 ........................G...A TCATGCGCGGCAATGGCCTTCTTGCAGGCAGC 3566 29 93.1 33 ...G....................G.... ACGAAGAACAGCCCGCCGGGGACCGGGTGCGGG 3504 29 100.0 32 ............................. ACATCCTCGACTTCGTCCAGCACGAGGACACC 3443 29 100.0 32 ............................. GGGCGTTAGCTCCTGGAGCGCCTGCCGTACCC 3382 29 96.6 32 ....C........................ GCTGGTTCGATCAGCCCGCATGATCTCGGTCT 3321 29 96.6 32 ......T...................... CCCTTGGACAGCACCGCGAAGCTGAGGATCTG 3260 29 93.1 32 ..........T.................T CCGGTGGTGCAGGGTACGTGGGCTTTGCCGCC 3199 29 96.6 32 ...................A......... CTCGGCAAGGCGGCCCGCATCGCCGAGGAGTA 3138 27 86.2 32 .......T..........A.--....... GTCGTCGGCATGTACGCGGACCCGGCGAGGTG 3079 29 100.0 25 ............................. TTAAGTTGGAACATTCAGGGGGCGC Deletion [3026] 3025 29 93.1 32 ...G.......T................. GCCCGCGCCAAGCTGAACGCGATGGCGGCGAG 2964 29 93.1 32 ...G......T.................. ATGGTCATGGCCGTCTGGTTCGACAAGGGTCA 2903 29 93.1 32 ...G.......G................. GTGTGGGTTGGCCCCGCCGCCGGCGCCGGGCC 2842 29 93.1 0 ...G......................T.. | G [2820] ========== ====== ====== ====== ============================= ================================= ================== 77 29 96.4 32 GTGCTCCCCGCCGACGCGGGGGTGAACCG # Left flank : GACACACTCGACGCCTCCGACCGCATCGCCGACGTCTCAAGGACATCAGCGACTGCCCTGCTCGCGGTCCTCGGCTGGTCGGGCGAGGCGCTGGACAGCAGCGAAATCCCGACCCGGCCAGGTCGTTCCGAACGTCTGGCAGACCTCGCGGCAGCCACCGGCAGTAGCCACTACTTGTGCGGCACAGGCGGCCTTCGGTACCTCGAGGCTGATCCCTTCGAGGCCCAGAGCATTTCGGTATTACCCTTCCGCACCCCCGTGGATGGACTCCTTTGGCGGTGGGCACACCGAACGAGCAGCCTCTGGGCCCTGAGCACGATCGGTCCTGACACGCTCGCGAACCAACTTGCTGCTCAGCGAGTAGCCCACCTCCTTGAGATACGCACGTGACTCATCTTGGTGGATCTTATGGAAGGGTGGGGGCGTGGCCGGGAGCACAGGTCGTTGCGGGCTGCGCACTGGTGATCACGGCGGCGGCCAGGCCGCCGCGTGGCCATGGA # Right flank : CAGACAGGAGACACCAGTGCCGAACCCTCTGAGTGCTCCCCGCCCTGTGGCGGCTTTCTGAGCGATCTCGGTGAGGGCACGTATCCGATCGGGCAGGGGGAGGCAGGCGGGGCGGAAGCGGGCGATCAGCGGGAAGCGTTGGGCTGTAGGGCCGGTTGGGTCCATGGTTTTTCCGGGCGACGTGAGCGAGAAGGGGTGACCGAACGGGCGGCACCGGTCGCGGGTGTGACGGATACCGCCCGCAGGTCATGGGCAGTTGCCTGTGGGGGCGGTTATCGCTGCCAGTCGATGACGATGCGGTTGAGCGGGGTGTCGACGACGAAGCGCCCGGGGTGTTGCTCGATCGCGGGGGCGTCGAGGGGCTGGATCTCGAAGGTGGCTTCGCGGCCGCGGTAGGCGCGGTCCCAGGTGCGGGTCGCGTCGGCGACCTTCGCGGTCAGCTTGTCGCTCCCGGGGCCGTGGCCGATGACGCCGAACTCCCACAGCGTGCCGCCCTCAGG # Questionable array : NO Score: 5.65 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCGACGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCGACGCGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [30-32] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 13477-12534 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ948422.1 Streptomyces antibioticus strain DSM 40234 PRJNA299224_s001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13476 29 86.2 32 .....AT...T...T.............. TGGGAATCACACGTTGCGGATTGGGAAGCGGC 13415 29 96.6 32 .............C............... TCAGAGGTGGGGATTTCTGACAGTCAGGGCCG 13354 29 93.1 32 .............GT.............. GCGTTGCAGATCATCCGGGACAGTCGGCTGTA 13293 29 96.6 32 ............................C GCCCCGTTGTCGTCAGTCTCGACCTCGACCTG 13232 28 96.6 32 .....................-....... CCAATCGGCACCTTCTACGGCCACGAGGGCTG 13172 29 89.7 32 .......T...T.G............... CACTCCACCTGAATCGGCGGGACGCCCGGCGG 13111 29 100.0 32 ............................. CTGGGCTGACGGATGGCCGGCGGCGGACAGAT 13050 28 96.6 32 .....................-....... TGCAGACGAACGCCGCGAACCTCAGGGACGTA 12990 29 100.0 32 ............................. ATCACCAAGGAATTCCGCGCCTCCATCCGCGA 12929 29 93.1 32 ..........T............T..... ATGGAGACCGGCCAAACCGAGGACGCGTTGAA G [12907] 12867 29 96.6 32 ..........T.................. ACCGTGCCGTCGACGTCGGTGAACCGCACGGT 12806 29 93.1 32 ....................C...G.... TCGTGCTCGGGATACACCGTGCCCTCGGCGAC 12745 29 96.6 32 ........................G.... CACGAGCTGTGCCGGAAGACCGGCTACTCGGC 12684 29 100.0 32 ............................. CCCCGGATCAAGGTGGATGTTCCGGTGGCGAA 12623 29 96.6 32 .................A........... TAGACCTGCGTCCTGGTGCGGTCCTGGACGCT 12562 29 89.7 0 ........G.....T.........G.... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 95.1 32 GTGCTCCCCGCCGACGCGGGGGTGAACCG # Left flank : GTCCCTGCCGACTGGACCAACGTGCCCCGAGCAGCCCTCGCCGAGGCCCCACAAACCCTCACCGTCGAGCGCACCTTCCGCCCAGGAGACCGGGTCGACTTCCGCACGGTCGTCAACCCGGTCCGCAGCGTTCGACCCGCAGCTGGCTCATCACCGAAGCAGCGTGGCGCCCGCGTCCCCCACACTCGCCCCGAACACGTCAGAGACTGGTTCGCGCGCCGCCTGCAACCACTGGGACAATCCTCCACCGCACCCGACGGCGTCACACGTATCGGAGCCGACACAGACACCGAACGACTTGCCCTGCGCATGCTGCCCCGTATCTCCAGCACGACATCACACAAAGGCCTGCGCATTGCCCGTGCCGAAATCAAAGGCACTCTCACGATCACCGACCCCAAAACCTTCGTCACCGCCCTTGCTCAGGGCATCGGCCATGCACGCGCGTACAGCTGCGGACTCATCCTCGTGCGTTGAAAGCTCGGCTACTCAATCCGGCA # Right flank : CTGGAACAGGCGGTACCGGCGGTTGTGGGGAGCGGGGTCTGGTTAGAGCAGAGCGATTTCGATGGCGAGGGCGCCGAGGGCTTCTTTTTCGGGTGGGTAGATGGCGCGGATGTTGGTCAGTTGCTGGTCGCGGGTTGCCGACGGGTTGACGTTGGTTGGTCCTTCGCCGTCGAGGAGGGCTGCGAAGTCGGCGTACTCGGTGACCCTGATGACCCTGACCTCGCAGGTCTCGTCGGTGCCCTTGATGCGGAAGCGGATGGTGTCGCCTGCTGTGAGGTCGGCGAGGTGGGGGTATTTCACTCGTACTTCGATGGTTTTGGTGCCTGCGGCGACGAGGTCGAAGTAGGGGCGGTAGAGGTTGAGTTCGCGGACGCGGGCGGTGGCGTCGGTCATGGGACGGAAATGCTCCTGGGTGCTGGGGCGGTCATCATGCGGCCGATCTCCGCTGCGGAGTATGAGCGGAAGAAGTGGCGGGGTTCGGACAGCATCGTCTCAGTTAG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCGACGCGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCGACGCGGGGGTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 24090-28530 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ948422.1 Streptomyces antibioticus strain DSM 40234 PRJNA299224_s001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================================================================= ================== 24090 29 75.9 30 ......................GTTCGGA GGCCAACAACGCCCTCACCGCCGACGAGGT A,T [24110,24112] 24151 29 69.0 30 ..C.....A.............GTTCGTA CGTCGGCTGTCGCATGTCTCTGCGGGTGCC GT [24172] 24212 29 75.9 30 ......................GTTCGTC GGCAGGCTTGCGGGACTGCGGGGGCCGCAG AT [24233] 24273 29 79.3 30 ......................GTTCA.A CTGGGCAGCGCTGCAAGCCGGCGAAACGCC GT [24294] 24334 29 79.3 30 ......................GTTCGG. GAGGGCAACACCCCCGACCGGCACGGCGGA GT [24355] 24395 29 72.4 30 ..C..........C........GTTCGT. GTTGTGGACGTTATGGCCGCACTTGTTGTG GT [24416] 24456 29 75.9 9 ............A.........GTTCG.T CGCCACCTC A,T [24476,24478] Deletion [24494] 24496 29 72.4 145 ..C...................GTTCATT GGTCCGGCTCTTGCGCTGAAACTCGCGGAAGTGCCGACGCGGGGGTGGTTCGAATCGGGCGTAGTACTCGTCGGTCGCCTTGTCGTCCTCCCCGCCGCCGCGGGGGTGAACCGTAGTACCCCTCCCCGATCCGGATCGGGTCGAT GT [24517] 24672 29 72.4 30 ...........A..........GTTCGGC GCACGACCGCCGTGTCACCGCGCTCACCCA GT [24693] 24733 29 72.4 30 ..C........T..........GTTCG.C CCCGACCCGGCGCTGGAACGCCATGTGGGC GT [24754] 24794 29 72.4 30 ..C...................GTTCGTT CCTGTCCCGAAGGGGGAACCTAGTGCTCCA 24853 29 79.3 30 ..C...T...............G..CG.C GCAGAACCTCCCTGACCCGAACGCCTGATC 24912 28 89.7 32 ..C.............-T........... TTGTTGCCCCGCAGGACCCCGGTCCGCTCCAC 24972 29 96.6 32 ..C.......................... CTTCACCGGCCGAGTGAGCAGTTCCTCGCGGA 25033 29 93.1 32 ..C............C............. TACCGGGTGGCCTGGACAGGGTAGAAGCGTCG 25094 29 96.6 32 ...G......................... CCGACGGGCCGTTCCATCTGCATGGGTTCGGT 25155 29 96.6 32 ..............T.............. GCCGCGCTGAGCCTGGACGTCGTGATACACAC 25216 29 93.1 27 ......................C.C.... GCTTCCTCCTGCACCTGCCCGTGCAGT G [25238] 25273 29 96.6 32 ..C.......................... GCACAGGGGCGACCGTGCGAGGCGGATGCCGC 25334 29 89.7 32 ........A...A......A......... CACGAGGACGGCCTGTACCGGCACCTGCGGTT 25395 28 93.1 31 ..................A...-...... GGCCCAGACACCATCGAGCGCCCGGTGGGCA 25455 29 96.6 32 .................A........... CTCTACGCGTGGGTGAAAGCGGGCATGCCCGC 25516 29 93.1 32 ...........A.............C... GCGTCCAGCGCGTCGAGCAGCGGCTGGAACGG 25577 29 89.7 32 ........T..A................C TTCCCTGGGGAGCCCTCTTGAACGGGTGCCGG G [25599] 25639 29 93.1 32 ..A....T..................... CACTTCCGGCACTGGCCGGCCACGGACCGGCT 25700 29 100.0 32 ............................. GAGTTGTGCCAGGCGGCCGTCACGATCGGCGT 25761 29 93.1 32 ...G......T.................. CCGGACCCGTCGATTATCACGCCGCGATAGTT 25822 29 86.2 32 ...G....................AAC.. TATTGGACCAAGCTGCAGCACACGGGGCCTGG 25883 26 79.3 32 .............---........AAC.. GTGACGCGGCGCTGCGACTGCCCGAACCGGCC 25941 29 96.6 33 ...G......................... TAGTTGGTGCCGTCCGACGTCAGGGAGCGGCTG 26003 29 89.7 32 ..A............C....A........ TTCGACATAGGCATGACGCCGCGCATGTTCGA 26064 29 93.1 33 ......T................C..... GCGTTTTGGTACGTCGTGACGGCCTGGTTGATG 26126 28 96.6 32 .....................-....... TCGCGCATCATCTCGGCGGCGCCGCCGGGGCC 26186 29 79.3 26 .........T..........C.C..CCT. ACCCATGCCCTACACCGACCTCGCCT GCA [26208] 26245 28 82.8 34 ...............T.....-C.A..G. GGCGCGGTCGCGTACTACAGCCAGCAGAAGGGGA 26307 29 82.8 37 .CT.....A...A.G.............. AGCAGGGAGGCGGCGGCTCGAGCAGCGCGTGGGCGAT G [26329] 26374 29 100.0 32 ............................. GAAGATCAACTGGCCCTCGCTCGGGCATGGAG 26435 29 96.6 32 ........................T.... CTCAACGGCTGGCCCTTGACACGCCAGTACCC 26496 29 100.0 32 ............................. GTCTGGGCTCAGCGCGCCGCGGTCGAGGGCTT 26557 29 96.6 32 ..........T.................. TCGCCGTACCGCAGGGTGGGTTCAGAGCGCTT 26618 29 96.6 32 .................A........... GTTGCGCTGGCCGATGTTGGCGTAGGTCACCG 26679 29 96.6 32 .......................C..... CTCGATCCCCGCAACTCCCATGTCGTCAGTTT 26740 29 93.1 32 ........T...A................ CTCCTCGTGGCCAAGTGGCACGAAGAGGGCCG 26801 27 89.7 32 ...G..................--..... GACAGGGTCCTCGGCCTCTCACTCGTCTCCGT 26860 28 93.1 32 ........T............-....... ATGCTCATCGGCATGCCCACCCCCGCGTTGAC 26920 29 96.6 32 .........C................... GACCCAGGCCATGCGGAAGCCCCGCCCGATCA T,G [26930,26943] 26983 29 96.6 27 ..................A.......... ACGGTCATGCAGTCGCCGGTCACTGCC 27039 29 100.0 32 ............................. ACGGGTGCGGCCGCGGCCGCCGTGGTGAACCT 27100 29 96.6 32 .............C............... ACCGAGTACGCCGACCTCCTCGAAGACGAAGA 27161 29 96.6 32 ..C.......................... CGGCTTGGCCTGGCGGCCCGGCGCGGGCTGTG 27222 29 96.6 32 ..C.......................... TGACCCCGGTTGTCAGTGGTGTGCCGTACCGT 27283 29 89.7 32 ..C......A...........C....... GTATCGAGGTTGGCGATCCACACCGCGTTGCT 27344 29 89.7 32 ...T..........A..........A... CAGATGATGGACGCCATGTTCACGTCGACGCC 27405 29 89.7 32 ..A........................GT CGTCGGTGCGCGCCACCGGATACTCGGTGTCG 27466 29 93.1 32 .C......................A.... ATCGAGTACATCTCGACGGACGTCACGCTGTG 27527 29 96.6 32 .C........................... ACGGCCGGGCAGCTCATTCGCACGGGCCTGGT 27588 29 96.6 32 ............A................ GCGGCCATGACTTCCTCGTCGGTCTTTCGCCC 27649 29 96.6 32 ....G........................ ACCGGCGCCGCGTTCGCCGCGATCGTGAACTT 27710 28 96.6 32 ........................-.... CTTAACGTGCTTCCTCAGGTGGGCAAGCGTTT 27770 29 100.0 32 ............................. TACAGGTAGCCGAGAAACGGTACGGCGGGGAC 27831 29 93.1 32 ...........A..........C...... CCGAACCCGTGCTTCACGGGCGTGATGTTCCG 27892 29 93.1 32 ..................C....A..... GCCCGGAACAGCATCATCGTGGCGGCCGTCGA 27953 29 96.6 32 .....A....................... AACTACTACGTCTACGGCTACATGGTGATCGG 28014 29 100.0 32 ............................. GCACCACGGGCCGGCAACGTAGCCGCGCCAGA 28075 29 93.1 32 ...........G..T.............. TGACATGACCTTCTACGACTGGCTCGCATCCT 28136 29 96.6 32 ..............T.............. CCCATGCTGGGCACGGTCGATGACGCGAACCG 28197 28 89.7 32 ..C...........G.......-...... ACTCCGCGGACGGTCATACGAAGTCCAGCCAT 28257 29 96.6 31 ..C.......................... GACACGCAGACGGTTATGGGCCATGAGCGAG 28317 29 86.2 32 .GT.CT....................... GCCCGCCTCGGGGGGACTGATATCCGTACTCC 28378 29 96.6 33 .......T..................... GTCGCCGAAAGCCCCGTCCCCGAAGAGGTCGAG 28440 29 93.1 32 ..C.....................A.... GCAACCATTGGGCCTGCTAGCGGGCGGTGAGG G [28452] 28502 29 89.7 0 A.C..A....................... | ========== ====== ====== ====== ============================= ================================================================================================================================================= ================== 72 29 90.4 33 GTGCTCCCCGCCGACGCGGGGGTGGTTCG # Left flank : ACCAGACACCCCTGGACCCACACCCTCCCCCTCCTCCCCCAACTCGCCCCCCAAGCGCTCCTCCACCTCGCCCGCATGGCAGCATCTACAGGAATTCACTCGATCAGCCCGCAGTAGAGAACCCCTCACCCCTCCCGCAGCGGCGGGAATGCACCCGGGATCATCTTCACCCGACGCCACAGCCCATCCACTCCCTGCATCCGCAGGGGTGCCCCCTCGTCACCACCCTCCGCGGCTACATCCACTCCCTCCCGGCACCCGCTGGGATGTCCCATTCGGAGCCGGTAGCTCAGGCAGCAAGGGCCCCACCCTCCGCAATCGCAGGAACGAACAGCAGGTCGCCGCTTAGCCAAACCGGCGATCTCCGGGTTATCGCGGCAAAGGGCGTGTCCACCTTCCGCGGCGTCTCGCTGAGATCGGCTGCTCGGAAGAAAAGGGGTGCTCCCCCGCCGAGGCGGGGGCGCTTCACCGCCCTCGGGGTCGTGGCCCGCGTTAAGCGC # Right flank : GCTTTGTGTCTCATTGCCGTCGGCCAGTTACGGTCCCGGCATGTGAAAGGCCGGACGGGTGCAACCGTCCGGCCAGTTCAACCAGCGAGGTGCAACTCGCTGATCTTCAACCCGTCTCTGCCTAAGTGTTGTCCCGTAAATGATCTTTGACGCGCCGGATGACCTGCTCGCTTCTCCGTCATCCGGTGAGGGTGAGGTTGTGCAGGCGGGCGATGCCGAGCATGGCGTAGTGGACGCCGTCGCCTTTGAGGCGGCAGTCGCGGAGGATCTTCCAGCTCTTCATGCGGGCGAAGGTGTGCTCGACGCGTGCGCGGACCTTGCGGTGGGAGGCGTTGTGTTCCTCTTTCCAGGGCGGAAGTTCGGTCTGGCCGCGTTCGCGTCGGTGTGGGATGACCAGGCCGGTGCCGCGGTAGCCGCCGTCCGCGATGACCGTGGCGCACCTGACGGCGTCCTTCGCGCCGGAGAGCTCCCATGCCTTGCAGTCGTTGCGGTTGCCGGGC # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.13, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCGACGCGGGGGTGGTTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCGACGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [46-38] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.15 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], //