Array 1 13406-11936 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGICE010000004.1 Wohlfahrtiimonas chitiniclastica strain DSM 110473 NODE_4_length_178358_cov_311.019991, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 13405 28 100.0 32 ............................ AACTGCGAGCTTAAATGTTTCAGCTACAAGAA 13345 28 100.0 32 ............................ TTCTGAATCATGCTATCAATATTACTGATTAC 13285 28 100.0 32 ............................ AATACAATCACTTGATGAAAAGCATCGTTGAG 13225 28 100.0 32 ............................ TGCACCACCCTTTTTAGGCGTGAATTTTCTTA 13165 28 100.0 32 ............................ TTTCGCATCCAATTGGGATTTTGCTACCTGCC 13105 28 100.0 32 ............................ GTAAAATCTTTGCTGAGGGCAAATTACTATCG 13045 28 100.0 33 ............................ ATTAAAGCAGAAAAAAGTATCAATGCGCTATAT 12984 28 100.0 33 ............................ CGTTGTTGAAGGCCTAGAGTTCGGCGTTGATAC 12923 28 100.0 32 ............................ AACAAGCAAACGTGATTTTTATAATCGAATCT 12863 28 100.0 32 ............................ TTCATCATTTAACTTTTTGCCTTTGATAAAGG 12803 28 100.0 32 ............................ TAGTAGGATATGCTTTTCTGCTTCCGCCTTCT 12743 28 100.0 32 ............................ AACAACGCCACCAACATTGCCGCCAACACCCA 12683 28 100.0 32 ............................ AGCATTAACCTTAAATTCATTGCCTTTAGTTG 12623 28 100.0 32 ............................ TATCGTCATAAAAATAATCATCAAGTGTCGTA 12563 28 100.0 32 ............................ ATTTGCGTACATGTTTCCCAAATTAAATTGAG 12503 28 100.0 32 ............................ AACTGAAAAGGAGTTAGAAACGCTATGGATAA 12443 28 100.0 32 ............................ TTTCCATAGGATAGCCAATTTCTCTATTCCAT 12383 28 100.0 32 ............................ ACAGCGCAGTTGGCGTCAAATATCGCCGCTTC 12323 28 100.0 32 ............................ AAGAAGTCCTGCTGTTGATCGCTGATCCGGCT 12263 28 100.0 32 ............................ AGAAAGCATGGCAGCTTTAGTGAATTTATGGC 12203 28 100.0 32 ............................ TCTAGTGCACTCAAATCACTACTGCATTCAAG 12143 28 100.0 32 ............................ GACGTATATCCCCGGCGGTGATATTATCTCGC 12083 28 100.0 32 ............................ CGCAGGTGAGAGAGAACACGCAGCAAGCGCGG 12023 28 100.0 32 ............................ ACTCAGCGATTCAGGAAAAAACACGCCATCGC 11963 28 82.1 0 .................A..T..T.GT. | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.3 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTGAATGCAGGTTTGTGGCTGTCACGCTTGACGGATTATGTGCACATTTCTTCTATTAAGCCGGTGCCAAATCGTGTGATGCATTATGCGATTTATCAGCGTAAACAGGTCAAAAGCAGTGTTGAGCGTTTAGCGCGCCGCTATGCTAAGCGTAAGCATGTGACATTTGAGGATGCCATGGCACATTTGAATGGCAAAACGCCAGAATATTGTGATTTGCCTTATGTTCAGATGAAAAGTGAAAGCACGGATCAACGTTTTCATTTATTGATCCATAAAGTAAAAGTGACAGCACCCACGGAGGCGGCAAACTTTACAACGTATGGTTTGAGTCATCATGAACAATTGTCTGCTGTCCCTGAATTTTAACCAATGTTTTTTGCTCTTTAAAAATTTGGATAAAAATCAGTAGCTTATAAGATAAGGAAAAATCATTGGTCTTTTCAGGTAAACTACCTTCGATCAGTGATTTTTCCTATCTTTTGTGCCGAAATTTTACT # Right flank : TTAAATTAAGCTATTGATTTTTATCTAAAAAATAAGGGTATATTTTTAATATACCCTTATATGTACCTTTATTTCTGAGAATCAACCCATTTTTTTATATCAGACAATCTCCAACGTGAAGATGTACCAAATTTTATTGGGGCAGGGAATCGCCCCTTTTGAATGGCTTCATAGATCCATTTCTTATTAAACCCTATGATATTTGATACATCTGAGATTCTTAAAAATCGGTCTGTCTCCAAAGGCTCATCTTCAGAATTTAATTGATAGATGATATTTTGTACCATTGCTTCAATGTTTTCAATTCTCTTTGATGAATGAGGATCGAGTTGTACTTGAATCGTTGTCATATACTCTCCAATCAATAATTTTTAGGCAAACAGCTCAATTTGTGATTGTTTGAGCAATTTTTTTTGTTGTTCTTTAGCAGATATTTCTGCTAATCGTTTTGCTTGGTTACCACTTACAACATCAACAAGGTGAGCAAAGTTTACAGAGGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 140262-138292 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGICE010000004.1 Wohlfahrtiimonas chitiniclastica strain DSM 110473 NODE_4_length_178358_cov_311.019991, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================================================== ================== 140261 27 75.0 174 .......ATG...A.C...-....T... GGTTGCGCGGTTGCAGGTGCGATTGAGCATGCGGACACTTAAGACCTTTATGGTTTGATCTTTAAAAATTTGGATAAATATCAGTAAATTACATGTCATTGGAAAAGGATTGGTTTTATGGCTATAAACTGCCGAAATCATGATGTTTCCAATGGCTCTGTAATATTTTTAATT T [140258] 140059 28 100.0 32 ............................ CTGCCCACCACTGCCCCATCCTTGACGCTTCA 139999 28 100.0 32 ............................ TTGCCATAACAATGCTCAAAAGCAATATGCGC 139939 28 100.0 32 ............................ AAATAAATCATCAATCGGGCAATGATGAGCTT 139879 28 100.0 32 ............................ TATTCGCTTTAACAAGTCTGGCCATTCCTCCC 139819 28 100.0 32 ............................ TGCTGTGCCGCCCATTTTAGCAGTGGCAGTCA 139759 28 100.0 32 ............................ TGACAATGCTACAACCGCGAAAGCCAATTCTG 139699 28 100.0 32 ............................ ATGTAAAAAGTCCTACCTGCTTTGCCGTCCTC 139639 28 100.0 32 ............................ TCCGTTATTTTACAAAGTGCGAACATGGCACA 139579 28 100.0 32 ............................ ACTAAGCTTCGCAAGGGCTTCTTCAGCTTCTT 139519 28 100.0 32 ............................ TGGGTCATTAAATACAGAGCAAAGAGAAAGAT 139459 28 100.0 32 ............................ ACCAATTGAGCCGCCAAAAAGCGGCATTAACC 139399 28 100.0 32 ............................ AGTCGCAAAATGTGTCGGTCATTAGCTGCATG 139339 28 100.0 32 ............................ ACTCTTCTTTTAGATCAATAAGCTTTCTATTA 139279 28 100.0 32 ............................ ACAGATGTATGTTGCTGTAACTTTGCTGCGCT 139219 28 100.0 32 ............................ GCAAAATTCGACAGATTAGTTGTTTTCTTTGC 139159 28 100.0 32 ............................ TCTCTATGAGATGTCTAGCAGGTCGCCTTAAC 139099 28 100.0 32 ............................ TGTTACTCGTGTAACTTGTGATGACCCTCCTT 139039 28 100.0 32 ............................ AAAACCTGTTAATAACATTATAACCGCAGGTG 138979 28 100.0 32 ............................ ATATTTGACTGTTCTAATGCGACTTGCTTATT 138919 28 100.0 32 ............................ ATGATCTTTGCCAGATTTACAATTATTCCAAT 138859 28 100.0 32 ............................ TTTTCCCGCGTGAAATGCTACGCCATAGCCGC 138799 28 100.0 32 ............................ ATCTGCCACGACTGTTTCAGATGCAGTTGTAT 138739 28 100.0 32 ............................ TGTATCCCGAATGGATATTGCTTTAGATATTC 138679 28 100.0 32 ............................ AATATCGTTTCATTTCTTGAAGCTGACAATAT 138619 28 100.0 32 ............................ ACAATATCACATCTGAATATGTGAAATGCCCA 138559 28 100.0 32 ............................ TACAGCTACATCAATCACACGTTTTTTTAGGT 138499 28 100.0 32 ............................ AATCCTCGGGAGCATCAAATAAATATTTCCCA 138439 28 100.0 32 ............................ TGATTCATTCTTTAGCAGATCAACAATTTCGG 138379 28 100.0 32 ............................ TTGTATTGTTGTTGTAGTGCCATATCATGATA 138319 28 92.9 0 ........................A..T | ========== ====== ====== ====== ============================ ============================================================================================================================================================================== ================== 31 28 99.0 37 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ACAAAAAATTTCTGTGCGCATCGTCAATGAAGTTAAGCACGTGAACCGCATTGTGTATGACATCACAAGTAAGCCACCTGCAACGGTGGAGTGGGAATAATTTAGTTTCCACGCATTGACATGAACACATAAAATGGCCTAAATAAATATTAGGCCATTTTTTTTAATGATTTTTAGGAGAGTTGAATGAAAAAATTATGGATGATTACAACCATTATGGCAGTTTTAACAGGTTGTGCTTCTGTTGAGCAAGATACCGTGGTGCATGATTTTACTGCATATGGCAAGCTCAATGAGCCTTGGCGCATCGTGGTTAAACATGATGATCAGTTAGAGATTGAAGGGGTAATGGTTCGCGAGGGCACATTGAAAGTGACGCGATCGGCATATGCAAAAGGTGTTGAATTCTCAGGGGATTATGATGGGCAGCCATTGACATTAAACATCCGCTCATTGAAGTGTAAAGACAGCAATGGCGATGAAACAGACTTCACTGCCAC # Right flank : TTCATAAGACTCATCTCTAGAGCTTGAATATTGATTGTGTTATGATTTAAGAATCACAAATAAAAAATCAAATAACAATAGGAAAAATAATAATGAAAAAAAAGATTTTATTAGGATTGGTATTCGGGGTGTTTTCCATTGGGCAGGCAAATGAGTTAATCATTGCATCAGCGATGATTGAGGCCAGTGATTATTGTCAGCAAAAAGGTAAAAGTGCATATTATAACGATCGTGGACATTGGAAATATATCGACAAACGTGCTTATATCGAAGCCTTAAATCATTATATTTATACCGCAGAATTAAATTTATTGATGTCAGGTACGCCATTAGATAAGCCAGAATTAATGCGAGAATTGAAGATTTTAGGTCCTCAACAATTTAAATCTATGCAAAAAAAGAATATGATTAAGTGCCAATAGTTGTGCATTAATATAATTAGGAATGGAATAATGATAAATTTTTTACGAAACATCAACGAAAATATAAAAAAGATGTCG # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:-0.42, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //