Array 1 979624-981116 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050753.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST45 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 979624 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 979685 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 979746 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 979807 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 979868 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 979929 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 979990 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 980051 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 980112 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 980173 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 980234 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 980295 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 980356 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 980417 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 980478 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 980539 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 980601 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 980662 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 980723 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 980784 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 980845 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 980906 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 980967 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 981028 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 981089 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 997248-999212 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050753.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST45 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 997248 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 997309 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 997370 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 997431 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 997492 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 997553 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 997614 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 997676 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 997737 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 997798 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 997859 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 997920 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 997981 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 998042 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 998103 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 998164 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 998225 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 998286 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 998347 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 998408 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 998469 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 998531 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 998592 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [998634] 998634 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 998695 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 998756 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 998817 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 998878 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 998939 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 999000 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 999061 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 999122 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 999183 29 96.6 0 A............................ | A [999209] ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //