Array 1 5727-4662 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXBT01000230.1 Salmonella enterica subsp. enterica serovar Hadar strain SAL3338 NODE_230_length_5768_cov_3.74759, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5726 29 100.0 32 ............................. CGGTCATTTTAAAGAATCCCGTTAAACAACAC 5665 29 100.0 32 ............................. GACATTTCAGTTTTGAGCATGAACCTGATTCA 5604 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGTTGTTTAGTTCCT 5543 29 100.0 32 ............................. AAAACCGTACAACAGACAAAATATAAATATTG 5482 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5421 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5360 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 5299 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 5238 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 5177 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 5116 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 5055 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 4994 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 4933 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 4872 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 4811 29 100.0 32 ............................. GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 4750 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 4689 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GGATAAACCGAATGGGATGTTCTCGATAATGGCGACGACGA # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTGATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11977-13716 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXBT01000079.1 Salmonella enterica subsp. enterica serovar Hadar strain SAL3338 NODE_79_length_15414_cov_3.83526, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 11977 29 100.0 32 ............................. CGACGCTTCCATCGTCTGGCATTCCTGTTCGT 12038 29 100.0 32 ............................. CCCGCGTATTAACAACGACGAGCAGGGCGTGC 12099 29 100.0 32 ............................. GTTGCGCAGCCATTGAGCTGCAAACGGATCAA 12160 29 100.0 32 ............................. CGCCCCCCGCATACAGCGAGAGACGGGCCATG 12221 29 100.0 32 ............................. CGCCGGGCGCGGGAGTCCCGGGCGATCCTCCC 12282 29 100.0 32 ............................. GCCCGAAATCAACTTGCAACATTTCAGTTGGC 12343 29 100.0 32 ............................. CATATGATTGACGACAATGAATTTTTTTTCAA 12404 29 100.0 32 ............................. ATAGTTCATCTCTGTTCTCCAGCGGTTTCTAT 12465 29 100.0 32 ............................. ACGGCATTATCACGGCTATTTCTCTGGAAATG 12526 29 100.0 32 ............................. GACAGGACTTACGACCGGCTGGACTACGCATC 12587 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 12648 29 100.0 32 ............................. GCTGAGATAATTGCCGATCATCTTGAAGACAT 12709 29 100.0 32 ............................. AATGATGAGGGGCTGGCAACGTTTAGCGCCAC 12770 29 100.0 32 ............................. CTGGCCACTCAACAGGGAAATATCGCGTGCGC 12831 29 96.6 32 A............................ CCCATCAAGATAAACATCATAGCGAGCACCTG 12892 29 100.0 32 ............................. TTTGAAATCGCTATTCTTATTGCTGTAGCAGT 12953 29 100.0 32 ............................. CGTTAACTAAAACGAACAAAACAGGGAAATCA 13014 29 100.0 33 ............................. GCCGTGCGTCAGATCACCCCAAACGCTTTCTTT 13076 29 100.0 33 ............................. GCATTAGATTGCGTTGACGGTCACGTTCTTATC 13138 29 100.0 32 ............................. CGCCTCACTGATATTCTGCGGCGAGCTGAAAA 13199 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 13260 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 13321 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 13382 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCATCCTGC 13443 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 13504 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 13565 29 100.0 32 ............................. AAGCCATTGACGCAACGGAAAACGCCAATGCT 13626 29 96.6 32 .................A........... GTATGATTTGGACATAGCTAATGATGTAAAGT 13687 29 100.0 0 ............................. | A [13714] ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCACAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAAGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCAACAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7235-7995 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXBT01000157.1 Salmonella enterica subsp. enterica serovar Hadar strain SAL3338 NODE_157_length_7996_cov_4.09971, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 7235 29 100.0 32 ............................. AACTTAACTCCAGCATTCTGGCAATTGTTGCG 7296 29 100.0 32 ............................. GCGACATCAAAATCTATTTTTCATTCTATCTG 7357 29 100.0 32 ............................. CTCCAGCCACATTGCGGCGCGACCGCTTTTAA 7418 29 100.0 32 ............................. CAATGTTTCATGCTACGCAAGAGACCAGAACG 7479 29 100.0 32 ............................. TGGTGGAGTGCCGAACCGCTACCGTTTCAAAG 7540 29 100.0 32 ............................. TCATGGCGTCATTCGGTACTGATATGCCAATG 7601 29 100.0 32 ............................. TCGTTTGTAGCCGAAAACCGGCTGGCGCTGAT 7662 29 100.0 32 ............................. TAATGAATCGCCTTTCTAAAATGAAAGACGAC 7723 29 100.0 32 ............................. GCATCGAACCGCTTATCCGTCTGTACCCACTC 7784 29 100.0 32 ............................. CTTTCATTGCGCAGGGTATGCAGTCGGTTTCC 7845 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 7906 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 7967 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTCCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : G # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //