Array 1 162726-160926 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAX010000005.1 Salmonella enterica subsp. enterica serovar Derby strain XJ19BS1 YZU2050_005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 162725 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 162664 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 162602 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 162541 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 162480 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 162419 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 162358 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 162297 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 162236 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 162175 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 162114 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 162053 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 161992 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 161931 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 161870 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 161809 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 161748 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 161687 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 161626 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 161565 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 161504 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 161443 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 161382 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 161321 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 161260 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 161199 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 161138 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 161077 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 161016 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 160955 29 93.1 0 A...........T................ | A [160928] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 180187-179366 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHUAX010000005.1 Salmonella enterica subsp. enterica serovar Derby strain XJ19BS1 YZU2050_005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180186 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 180125 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 180064 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 180003 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 179942 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 179881 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 179820 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 179759 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 179698 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 179637 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 179576 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 179515 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 179454 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 179393 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //