Array 1 93558-94379 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOHC01000037.1 Escherichia coli strain 574 BN4_574_1_(paired)_contig_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 93558 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 93619 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 93680 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 93741 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 93802 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 93863 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 93924 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 93985 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 94046 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 94107 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 94168 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 94229 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 94290 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 94351 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 120082-120293 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOHC01000037.1 Escherichia coli strain 574 BN4_574_1_(paired)_contig_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 120082 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 120143 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 120204 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 120265 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GTTCTCCAATCAGCAGTGCCCATCTGATATGCAGTGTTCCCCGCGCCAGCGGGGATAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAGCGGGGATAAACCGACGAGGTACAGTGGTGCAAAAACAAATTATAGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTACCGAGCGTCACGAAACAGACAACACCAGGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCCCAGAATCTCTTTTAGCGCAACGATATTCCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTCCGGTTTTAAAATAAACCCGGCAAAAACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTAACGCGAAAGCGTCGGCGGTCAGTCGGCAGGTGTTCCCCGCGCCAGCGGGGATAAACCNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 120506-121287 **** Predicted by CRISPRDetect 2.4 *** >NZ_MOHC01000037.1 Escherichia coli strain 574 BN4_574_1_(paired)_contig_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================================== ================== 120506 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 120567 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 120628 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 120689 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 120750 29 96.6 53 ............................N NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 120832 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 120893 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 120954 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 121015 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 121076 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 121137 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 121198 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 121259 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================================== ================== 13 29 99.7 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGTGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGTTTGAGCCGTTTAAAGTTGAACAGGCGACGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTTTCAGTCGAGTGGCAGCTACGAGGAATCGGTGTTCCCCGCGCCAGCGGGGATAAACCGGACACGGATAACAGCTACCTGCAAAATTTAATGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCTCCAATCAGCAGTGCCCATCTGATATGCAGTGTTCCCCGCGCCAGCGGGGATAAACCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCAGCGGGGATAAACCGACGAGGTACAGTGGTGCAAAAACAAATTATAG # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //