Array 1 461498-459548 **** Predicted by CRISPRDetect 2.4 *** >NZ_NODW01000002.1 Escherichia coli strain MOD1-EC5432 MOD1-EC5432_2_length_614452_cov_39.0376, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 461497 28 100.0 32 ............................ AAGGCAAGTGATGGCGAAATTACCCGCGCAAT 461437 28 100.0 32 ............................ AAATTGGGGACACTTTCTTCTACCTCTTTTGT 461377 28 100.0 32 ............................ TCAATGCTGCTAAACGCGCACATGAAGAGTCA 461317 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 461257 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 461197 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 461137 28 100.0 32 ............................ TCGAGCGTACCAGGTTTACTGTCGTCATATAC 461077 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 461017 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 460956 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 460896 28 100.0 32 ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 460836 28 100.0 32 ............................ AGGTCGTAAACCCCATTTTCAAAACCAATCAG 460776 28 100.0 32 ............................ TGTGGCGCTGATGCGTCTGGGCGTCTTTGTAC 460716 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 460656 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 460596 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 460536 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 460476 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 460416 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 460356 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC 460296 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 460236 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 460176 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 460116 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 460056 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 459996 28 100.0 32 ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 459936 28 100.0 33 ............................ GTTCGACGATTGAGTCCGCCGCTGTTGTTTGAT 459875 28 100.0 32 ............................ CGGCGGACCACTCATCATCGTATAAATCTTTC 459815 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 459755 28 100.0 32 ............................ GACGAATGCCGCACACCAGGGCGTCTCGTCGT 459695 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 459635 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 459575 27 92.9 0 .......................C-... | T [459556] ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 471125-470555 **** Predicted by CRISPRDetect 2.4 *** >NZ_NODW01000002.1 Escherichia coli strain MOD1-EC5432 MOD1-EC5432_2_length_614452_cov_39.0376, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 471124 28 100.0 32 ............................ AGCAGCTTTCCAGCGAGCGCGGTTAACTCACT 471064 28 100.0 32 ............................ AAAACGGCGGGTTTTTTACGCGTGTGGCTGCA 471004 28 100.0 32 ............................ GTTAACCGTTTCACACTTAACACTATGAACCG 470944 28 100.0 32 ............................ CTACAGCAACTGATGCAACGGTAAGCGCGATC 470884 28 100.0 32 ............................ AGCAGCGGTGGCGAACCGCGCGTTGTTGATTT 470824 28 100.0 32 ............................ AGAACTCGAAATTTATCGCGGGACTTTTCAGC 470764 28 100.0 32 ............................ AGGCTGCTGGCGCTCTCGTTGTTAACGGCAGC 470704 28 100.0 32 ............................ GTTCCACGCGGATATCTGTAATTTCCAGCAAA 470644 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 470584 28 85.7 0 ....................T...C.CT | C,A [470558,470561] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //