Array 1 1503533-1504173 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009285.1 Paenibacillus borealis strain DSM 13188 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1503533 33 97.0 34 ....................C............ GTTTCAGCAGGTATATCCAATGACGATTCAGCAG 1503600 33 100.0 36 ................................. GACACCACGGAGTAAGAGCCACTACATGTCTGGGAA 1503669 33 100.0 34 ................................. ACACAGAAGCAGATTGATGCGGGTTGGGCGGATC 1503736 33 100.0 34 ................................. ACTGATGAAATAACCAAGAAATATGAATTCCTGC 1503803 33 100.0 35 ................................. TGCATAACGCTGAGATTCTTCGTTACGCCGACGGC 1503871 33 97.0 33 .................A............... TGCGTATGTACCACGACCCGTGCGTCCAGTTCG 1503937 33 100.0 35 ................................. AGCCGTAGATCGGTGCCCGCGCCGTCTCACACCCG 1504005 33 100.0 35 ................................. GATTCAAATGGCAGGAATTTGCATGGCAGGCTTTG 1504073 33 97.0 35 ...T............................. TTGGATGCTTCGAGCTCAGTAAGAGCCTTGCGCTT 1504141 33 93.9 0 ....................C........G... | ========== ====== ====== ====== ================================= ==================================== ================== 10 33 98.5 35 GTCGCACTCCGTGTGGAGTGTGTGGATTGAAAT # Left flank : TTCGCTGTGACCGAAGATAAACGGATGCAAAAAATCGTGAAATCCAACCTCGGCAAAGCCAGACTGGCCAAAAAATACAGCCAGGATGTGGAGCGTATCCAGCTGCTGATGAATGCCTGAGGACACTGATCAATAAGCCGAGACACCACAAACAGCCGGACCGTACGCGATGCGCGGGTTGGGCTGTTTGGGCTGTTTGTGATTTGGAATTCAATGAAATAGTTGTCTGAAAAACTATACAGGCTTCATAACTAGCTCCGGTCGCTTCAGGACCAGCAGCGGTTAAAGGGAATTAATTATTCTGGAGATTAAAAGCGATAGAGTAAGATAGGATCTAAAAGCTGGTGCGAATGCCAAACTCCCTCAGAATTTGTGGAAACTATAAGGAATAGGCAGTGTTTATATATAGTCAACAATTGATTGATATCCTTTCTAGTATTTTATTAGCGGAAGAATAGGGAATTAATATGGAAGAGGGATAGGTTATGCTGATTTCCGCA # Right flank : TTCATCGAAAAGGCGTTTTGCTGGAATTTGATCATGTTGCACACCGTATTTTATTGACAATGCAAGCAAAACAAAAGCACTGAACTTCCGCATAATCAGCAGAAATTCAGTGCTTTTTCATATCAGAGACTATTCTTTACGGCGTATTTCAAATAAATCGTTAGGGGTAACTTCGAAATAGAGGCATAACTTCATAATTAACTCCGCTGAAATTTTCTTCTTTTCCATATTCGTGTTGTGCATTAATTCCATTATTGTTGTTCTGCGGTGCCCGATCTCCTTGGACAGTTTTAATACAGATATATCATGTGCCTTCAATATTGTGTCCAGTTTGCAGTAGAGAGTATAGTCTTTAAATTCCATATGGCTCCTCCAAAATCGAAATTAGTTGCACTTTTAAAGTGCATATTGTATATTGTTGATATAGGAGTTGAACTTTAAACGTGCAGTTTATAGGTGAGAATTTAGTGGTACGCTTTGCAAATATCCTTGAGAGCAAT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTGTGGAGTGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 2 1505623-1508086 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009285.1 Paenibacillus borealis strain DSM 13188 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 1505623 33 100.0 34 ................................. CGGATCTCCTGCAGGAACTTCCTGCAGAAAAATT 1505690 33 100.0 34 ................................. ACCTTTGAAGAGACCACAAAGCATTTGGATATCC 1505757 33 100.0 35 ................................. GTCATATCTTGGACGGCATCCCATCCGGTCAGATT 1505825 33 100.0 36 ................................. TTCAGGAGTTGTACCGTACCACGTAGTACCCAAATT 1505894 33 100.0 32 ................................. AATGAGGTCTTATACCTTTTATACGATGAGAT 1505959 33 100.0 37 ................................. ACCTGTAGAAGTTACAAGAACAGCTTGATCTGGATAG 1506029 33 100.0 36 ................................. CTGGATGGCAAGCAGATCGAAACCAATGTATCCCGC 1506098 33 100.0 32 ................................. CACCCGGACGTACCGGACGACTACATTGACGA 1506163 33 100.0 35 ................................. ATTATTAAGCCTCCTTTAGGCAAGTCTGATAATGC 1506231 33 100.0 37 ................................. TCCGCATGATGGCAACCATTGCGCCATGGTCAGCAGC 1506301 33 100.0 36 ................................. CCTATTTAGAATCATGTCAATAGTGCGATAGTGTAC 1506370 33 100.0 35 ................................. GGATTACTCAAGAACTATGTAAACTATGTGGATCG 1506438 33 100.0 35 ................................. CTGACCCGGCTATTTTTAATCGTGGTAGCCGTGAT 1506506 33 100.0 34 ................................. AATTGGACAAGGAGTGTGATTTTATGGCTGGGAG 1506573 33 100.0 37 ................................. CGCCACCACATCTTATATGTGATACGTCCCTGTGTAC 1506643 33 100.0 37 ................................. ACGGATGGTACGACAAGCAGTTTTGATACGCATTATC 1506713 33 100.0 33 ................................. TTCCGCGTGTTGACAAATACGAAGTGAAGGACG 1506779 33 100.0 35 ................................. AAGGATGAACTGGACGCGCTTGGGGATATCTCCGT 1506847 33 100.0 35 ................................. AACGAGGCCGGTGCAGAATTACCTAAGTGGTATGA 1506915 33 100.0 34 ................................. ATCCAGAAGACAACAAAGTCATCATTCAGCGGCC 1506982 33 100.0 36 ................................. ATGGACACCGGCAATCATTGCAAGCTCGGCATCCCC 1507051 33 100.0 36 ................................. AGCTCTGACGAGTCCTGCAGCGATAAGGGGCAGCAG 1507120 33 100.0 33 ................................. GGTGCTGTGCAATTGGGAGGCCAGGCACTTGGA 1507186 33 100.0 33 ................................. ATCATCATAGTAGATAAGCACATGCTCATTTTT 1507252 33 100.0 35 ................................. CTGACATACGAACTTGAACGGGATGCTAACGGAAA 1507320 33 97.0 34 ........T........................ GGAAGATACTGCATGAGGAAAAATTGGGCTTCAA 1507387 33 100.0 35 ................................. AGCTCGTCATACAGAGTGCCGTCCGGTGCAAGGCT 1507455 33 100.0 34 ................................. AAGTAGCAGAGAGGCCCTGAAAAGTACCTGCGAT 1507522 33 100.0 34 ................................. GCAAAGCTCGTCCAGATCAAATGTACGCATAGTG 1507589 33 100.0 34 ................................. CCGCTTGAAGCAGTGCCGATATAGAGCTTGCTTG 1507656 33 100.0 32 ................................. TACCAGTGGGATGTACACTGACTCCTATCATA 1507721 33 100.0 35 ................................. TGCGTAGAGCGTGGGATTCCGATGCAGCAGCTGCT 1507789 33 100.0 33 ................................. AACGAGTGCGCCGGCGGGTACCTGCCATTGCTT 1507855 33 100.0 33 ................................. TCTATGCGTATGCAAATTTTGGAGTAACAGCGG 1507921 33 100.0 33 ................................. AGACAAACCCCTTGGCAATATGCTTACTGACCT 1507987 33 100.0 34 ................................. GCTCCATCTACTGCCGCTTGAGTTTTCAGCGTTT 1508054 33 93.9 0 ...................A....T........ | ========== ====== ====== ====== ================================= ===================================== ================== 37 33 99.8 35 GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAT # Left flank : CCATTTCAGACTTTGAGGCTATGTATAATATTAACCCAATTGAAGCCTTATCCCGATTCTATCTCGAGAATGTAGATACGTTGGATTATTGGGTGTGGGTACAAGCTGGAGGCTCCGCTGAGCTGGCCGTTAATTTCAGAAAGGCGAATCCCACTTTAACGCTAATTGAAGCTATCGAAAAGCTGGAGCGAATGCGAGATATTACATAGGTGCTTGAAATAAAAGGATTTCATTTATTAAGCAGAATTAGTATGGTTTAGAGGGAATAAACTACTTATGCAGAATATATTCTGTAGAGTTAGATAGGAGCCGGACGTTGGTGCGAATGGCAAGCTCCCATGAAATCCCCGGCTCCTTCGCACCTCAGAATTTGTCGAAACTCTAGGGGATTGAGAGTAGTTATAGAAAGTCAATGGTGGATCGATATTCTTTTTAGAATCGTATTAGCGGAAATGCAGGGAATTGATGCGGAAACAGCATGGGTTATGCTGGTTTTCGCT # Right flank : TCAGTAAAGGTTGCCGCGGTTGTATCTTTGCAGCGTCACACTCCGTATAGAGTGTGCCCTGGGTTACTACTACTCCTATTACAAAGAGCATCTAACATGAAACAATGTTGGATGCTTTTTCTTTAGGGCTTTATGGTAAATGTGATGAAATGTTCAAATTATCTCCAATTTTCGACTCCCTTTTCAAAAAGAAATTGCTATGATGAATAAGAGAATTCCTTATAGTGGAAAAGACCTATACGAGGGCGGCGATTGGATGGATTACATTGCTCATATCCGCGAAAGCGATGGGCGCATTCAGACGGTGACAGAGCATTTGCTGGAAGTACGTGCTTTAGCAGAGGCCTTCGGAGAGAAATTAGGAGTCCGGCATATTGCTGGACTAGCTGGAGTATTGCATGATCTTGGGAAATACACAGAAGAATTCAGAGAATACATATTAGCAGCGGTAAATAATCCCGATGCGCCACCTAGAAGAGGAAGTGTTGATCACTCAACTG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTGTGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 3 1517067-1520281 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009285.1 Paenibacillus borealis strain DSM 13188 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1517067 32 100.0 35 ................................ TCGGTAGTCAGTTTTTAAACAATAATGGCGGGGTT 1517134 32 100.0 36 ................................ TCCAGGAGACCGCGACCTAGATCGGCTGCCCGCGCC 1517202 32 100.0 34 ................................ AGGTCATGAATCACGGGAACCGGCAGTACTACTA 1517268 32 100.0 35 ................................ ATTGCCGCTTGTTGAATGGCTATGGTCTGCTTTGC 1517335 32 100.0 33 ................................ CGATCCCACCGGAGTTAGTAGATGCTTTTCCAG 1517400 32 100.0 32 ................................ ACATTATTTTGATAACATTGATACCGAAGAAA 1517464 32 100.0 35 ................................ ATTGATAATTTAAAACGCCATGCGAAAGCATGTTG 1517531 32 100.0 35 ................................ CTACACACAGGGTGGGGATTTGTCTCAGACACATG 1517598 32 100.0 34 ................................ TGAAGAGGCGCATTCCGCTAATCCGGCCGATTTG 1517664 32 100.0 35 ................................ CGAAAGTCGTCGGAATACGAGGAACTACCGCCAGA 1517731 32 100.0 33 ................................ ATAGAATCACTTTTGACTCAGGAATCACTAATT 1517796 32 100.0 35 ................................ TCCAGGTGAATGGTGCACAGCGGATGATGCTATTC 1517863 32 100.0 34 ................................ CATCCAGCGCTCTTAAATTGCTTTGCGGCGCTAG 1517929 32 100.0 34 ................................ GTTAAAACGATGACCGCCTCTGACCGGATGTTTC 1517995 32 100.0 35 ................................ TGAGCTGCGAACCGTTACTTGGTCAGGTTGATCTA 1518062 32 100.0 35 ................................ GTTCAGGGGGATATATGTTGGCTGTTGGAGATGAA 1518129 32 100.0 35 ................................ AAACACCGGCGTCCGGAGCATCCCAGATTTGGTCC 1518196 32 100.0 35 ................................ CTACGGTTGGAGGTTTGCATTAAATGTTGGTTTTT 1518263 32 100.0 36 ................................ CCGTCAACAGTGTTACCAGCACTGTATCGGGGTTGG 1518331 32 100.0 35 ................................ AACTTTTGCGCAGTGAATCAGCACCGCTTTCGGGT 1518398 32 100.0 33 ................................ TTTTTACCCTTGAACATTCCAGCAACCGAGTCC 1518463 32 100.0 33 ................................ AGTTTCACCGCGGACTTTGCGCATTACAACGCG 1518528 32 100.0 35 ................................ ATTCCGGTAGGCGTGTGCTTGGGCATCATGACCAC 1518595 32 100.0 35 ................................ GATCTGCAGTTGCAGCGCGTCACCTGCGGTACCAC 1518662 32 100.0 34 ................................ AGAAACTTGCTCTCATGGATCCAGCACTAAGCCT 1518728 32 100.0 35 ................................ ACCAAGAGTCAAACTATGAAATATCTGGAGAGAGC 1518795 32 100.0 34 ................................ ATGAGGGTACACAAGAATGCGAAATGGTTCAGGT 1518861 32 100.0 33 ................................ TTCGCTGTCTCGGCTGTATGTGGCTTTGATCTC 1518926 32 100.0 33 ................................ TTATAGGGAATGAGGTAAGCATGACCGAGGATA 1518991 32 100.0 37 ................................ GTACCTGCCGACGCTGTGGGCGCTGTAGGTGTTCCAG 1519060 32 100.0 35 ................................ ATCCAAGGAGATGCAACCCGCGGAATTCCTTCGAC 1519127 32 100.0 34 ................................ CGAACGCTGAAGGAAGTATTACACTGCATCCAGG 1519193 32 100.0 36 ................................ ACCTTCTGCTGCTGACGACAAACTGAAGAAGGTCGA 1519261 32 100.0 34 ................................ CGCGTGCGTGCGACCCTGCGCGGGCCGCGGATCA 1519327 32 100.0 34 ................................ GATACGAGATGCATATTTGGTTGTCGGCGTGCTG 1519393 32 100.0 34 ................................ CACTCATGTTCCCCGTGAAGTGCTCCGCATGTAC 1519459 32 100.0 35 ................................ TGAGAATGTGCCTCCAATCCAACCAGGACAACATC 1519526 32 100.0 33 ................................ CTCTTCAATGGTTACGAATTGATCATCATCTCC 1519591 32 100.0 35 ................................ CCGATCACCGGCACTTCTTCCGCACCTAACGGGAC 1519658 32 96.9 35 .............T.................. GGACTGTCCACGGTAACCTTTGGAGCCTCTGGCTG 1519725 32 96.9 33 .............T.................. TTACCCACATCCAAATCAAAGCTCTTTTCAACT 1519790 32 96.9 35 .............T.................. AATCTATCCATGGTTCTGAAGGTCAACGAGCTGCT 1519857 32 96.9 32 .............T.................. AGATCTTCGCGACGCCGTCTGTAGCCCGTCTG 1519921 32 96.9 36 ..T............................. CTAGATTGGCCTAAACTAGCTGATCTCACAAGAAAA 1519989 32 96.9 33 ....................A........... ACATCGTTTATCACTGCCTACCAGTTGTCCAAT 1520054 32 93.8 33 ........C.......A............... ATCAATCGCCTGTCCTCGGAATTGATCTCCGTG 1520119 32 93.8 32 ........A............C.......... CATTTGGTCTGTGGTCTGCCGGTCGTAAATTG 1520183 32 93.8 35 ..........A..T.................. CCCATAAAGAAAGGAACAACCCAATGAATACCTTG 1520250 32 75.0 0 ...A....A........G.T..TTG......C | ========== ====== ====== ====== ================================ ===================================== ================== 49 32 98.7 34 GTCGCTCCTCGTGCAGGAGCGTGGATTGAAAT # Left flank : CTGGACGAATATCCGCCGTTTTTGTGGAAGTAGGTGTAAAGAATGTTAGTGCTGATAACGTATGACGTAAGCACAACCAGTAGTGCAGGCCAAAGCAGGCTTCGGCGGGTAGCTAAGATTTGTCAGAATTATGGTCAGCGTGTTCAAAACTCGGTATTTGAATGTATCGTAGATGCTGCACAATTTACCGAGCTGAAGCTAAAATTGAAGGATATCATTAATCTGAAGGAGGATAGCCTTCGATTTTACCAGCTTGGAAACAACTATAAGAACAAAGTTGAGCATGTGGGAATAAAAGAGTCTTTGGACCTCGAAGGCCCTCTAATTCTGTAGTGCGAATGTGGAGCTCACATGAAATTCCCGGGAGATTCGCACCAATATTTTAACAATATTTGTATGAAATATTTTCATGTTTATTGATTTTGTATAGAAAAGTGATAATTGTTGCGATTTTCAGGCGAAAAAGAGGATTTATTTCCTTTTTTTGATGGAAAATCGCT # Right flank : CGAAGTCACCTTATAGTCTTTTCTGGTTTAGATTGGCACTCCCCGTTAGGGAGTATAATTAAAAAGGGACGGTAGCCCATGCCGCGATTTGCCTCACTCTACGTAGAAGCATTAACACCCCCAAAAAACCAGTACATATCCCACAAGTGAGTATCGTACCTGATCCAATCATGTTAAAATAATAGAAATGTATTGATCAAATCTACGTGCAGCGGGTGAATGGTTTGAGATTAAGAGATTTCATGGGCCCCTCGGATACTTCCGCACAGCGGCAGGCCAAGTGGATCAAGCGTTTTTTGCGTACCTATTGGCTCGTGATTGCTCTGCATTTTGCTGCGCAGCTCTGGGCTTTTCTGTTTCTTTCATACCCCATGGGACCGCATGAATTTTATTATGATGTCCTGCTCTATCCGACGCTGCTGATGAGTGCGGTTGTCGGATTGACCCAGTTCGTTGATGCTATTGCGCCGAAATATTCCTTTGTCCTGCTGTTTGTGTCC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGCAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //