Array 1 5334-6826 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDID01000055.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM208, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 5334 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 5395 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 5456 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 5517 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 5578 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 5639 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 5700 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 5761 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 5822 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 5883 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 5944 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 6005 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 6066 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 6127 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 6188 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 6249 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 6311 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 6372 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 6433 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 6494 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 6555 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 6616 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 6677 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 6738 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 6799 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22958-24922 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDID01000055.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM208, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 22958 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 23019 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 23080 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 23141 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 23202 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 23263 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 23324 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 23386 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 23447 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 23508 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 23569 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 23630 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 23691 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 23752 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 23813 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 23874 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 23935 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 23996 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 24057 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 24118 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 24179 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 24241 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 24344 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 24405 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 24466 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 24527 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 24588 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 24649 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 24710 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 24771 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 24832 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 24893 29 96.6 0 A............................ | A [24919] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //