Array 1 139377-140532 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_VAFC01000024.1 Campylobacter coli strain MON312 1010200025, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
    139377	    36	  97.2	    30	T...................................	AACACCACCTTTTTTATTTACAACAGATAT	
    139443	    36	 100.0	    30	....................................	GAAGATACAATTACTTATTTTTATTATAAA	
    139509	    36	 100.0	    30	....................................	TCGTCTGATAACTCATATCAAAGCTATCTT	
    139575	    36	 100.0	    30	....................................	GGTTCAGTTTTTAAAAAGTGCGAATGTATT	
    139641	    36	  97.2	    30	.............................G......	AAAAGTATCAAAAATACCAATAACTAGAGG	
    139707	    36	 100.0	    30	....................................	TTATGGGATTTTATAAAAAAAGATTTTTTA	
    139773	    36	 100.0	    30	....................................	TTAAAACTTCCAAACGATAAAAAAGCAACA	
    139839	    36	 100.0	    29	....................................	TCAAGCTCTATAACCTCTCCTGTTTCTAT 	
    139904	    36	 100.0	    30	....................................	ATAACTTCTCTGTATTTGTCTAGCTCAGGT	
    139970	    36	 100.0	    30	....................................	TATTTTTATAAAAAGGTTCAATATCAAATA	
    140036	    36	 100.0	    30	....................................	TTCAATGAAACCACAGGAAAATTAGAATAC	
    140102	    36	 100.0	    30	....................................	AACGATTATTCTACACTAAAGCATAATATA	
    140168	    36	 100.0	    29	....................................	AATAATGTTTTTCCTGTTCCTGTATCACC 	
    140233	    36	 100.0	    30	....................................	CTTTTCCGTTTGCGAAAGCTCAATACCTGT	
    140299	    36	 100.0	    30	....................................	ATAGGCAAAGACTATAATTATTTTAACTTT	
    140365	    36	 100.0	    30	....................................	TTAATTAAATATAGAAATAATAGTGGAGAT	
    140431	    36	 100.0	    30	....................................	AGATTGGTCACAAAATGGTTGGGTTTGTGT	
    140497	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
        18	    36	  99.7	    30	GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT	                              	       

# Left flank :   GAAGATTATTTTGCTAGGGTTGCTATAAACTGCGTAGCATTGTTTATTTTTATTTATGCTGCGGTAAACATTTCGATGACTATAGGATTTGCGCCTGTTGTTGGTATCCCGCTGCCTTTTTTTAGCTATGGAGGAAGTTCTTTTACGATTTTTATGATTTTCTTTGGAATTTTACAGCATTTGATTACTTTTAGATATTTTTGGATAGATAGTAAAAATAAAATAAAATAATTTTAAGCAAAAATAAGATATAATTTTATCTTTAAAAATTAAGGCGGATTTATAGCTCAGTTGGTTAGAGCAACCGGCTCATAACCGGTTGGTCGCAGGTTCGAGTCCTGCTAAATCCACCATTACTTTAAATATCTAATCTTAAATATGCATTAAACTATTCAAACTTTAAATAATATTTAAATCATTTGCTGTCACCATAAGACAAAATAGAAATTAATATTTTTTAAGTAAAATCTTTTATATATAGTGCTTTAGTTGATGATGAT
# Right flank :  TAGACTTTGAACAAATAAAGAAAAATAGAGCTTTTTGTATACAAAAATGTATAAAAATATGCTATCATTTTAAAAGAGAAATTTAAAAAGAGACTAAAATAAGTGGTTTTCGGTTAGCCACGCAGGGTTACAATCCCTTTAAAACCGTTAAAATTCAAACAAACTAGCTTGTCTAATTTTATTAGACTTAGTTTTGTTTTCTTTACATATCTTGTCATTGCTGTATTTAAAATCTTGTGTTTTTTCATCGTATTCAAAAAGAACTAAATTTTTATCATCATTCATTTTTTCATTAAAAGTAACTCCACCTAAAAGTATTTGCATATTGTCAAATTGTTTTTCGGTTATGGTTAATACTCTTATATTGCCACAAGGAGGTAAAATTCTTTCTACGGATTTGATTGCTGTTTTAGCCGAAGTCATTCCTTTACAAATTTTAACATATACGCTAAATTGCATCATAAAAAAGCCAAGTTTTACAAGCGAAACTCTAAATTTAT

# Questionable array : NO	 Score: 6.25
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTCTCTTTTTAAATTTCTTTATGATAAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:83.33%AT]
# 	Reference repeat match prediction:         F [matched GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT with 95% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [2-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [83.3-80.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.5,0.41   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
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