Array 1 3329-3553 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYSO01000066.1 Klebsiella quasipneumoniae strain 14WZ-34 NODE_66_length_5021_cov_52.894215, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =========================================== ================== 3329 24 95.8 43 ....G................... CCGGCTCCTTGAGATCCAACGGCTTCATGTTAACCCGACATGA 3396 24 100.0 43 ........................ CCGGCCCCTTGACGCCCAGCGGCTTCATGGAAGCCCGGCAGGG 3463 24 100.0 43 ........................ CCAGCCCCTTGACGCCCAGCGGTTTCATGACAACCCGGCAGGG 3530 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =========================================== ================== 4 24 99.0 43 CAAAACAACCCCCTTGTTCGCAGT # Left flank : TAAGAAAGAGAATCCAGGCGGCTAAAGTTAACGAAGAACTAATTAGAATTTTCCCTGATAGTGAAGGGATACCTAATACTTACTATGGTAAATTGGCTAAAATTGAAAAAGTTGCTATTGCCCATAAAATCCCTTTGTCAGAGCTAACATCTGAAGTCGGGACAGAAGACAATAAGATCATTAACGTTAATGATATTGAGGAAGTCCAGAAATCCATTTTAGATGGTTTGCATTCAGTACTTACCATTCTCTGTAATGATGCAAATAAACCGCCTAAATGGACTGTGTCAGATATTATAGATTTCGAAGATAAGGATACTTACGCACGTGTCAGGAAGAGCCAAGACGGTCAAAAAGTAAGTTTTGAGTTCAAGCGTATAAGCCAGTCAACCATTAATGAAATAGAACGTTTAATTAAAGTTAGTATTGGCAAATCAAAATAATCATAAAATGGTATGGTCATGGCCCTTAGGGGTCATGACTTTATAATCCATTAAAAG # Right flank : TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTTCGCAGTCCAGCCCCTTGACGCCCAGCGGTTTCATGACAACCCGGCAGGGCAAAACAACCCCCTTGTTCGCAGTAACGCTATGACCGGTCTGTGACACCTGATGAATGGTTTTTGATTTACGCCCATATAAATTAGGTTGTTAGTAGAGAAAAAAATTTATTCATGCTGATAAGATTGGGAAAGGTGGCAGATCTGGATTGAGTAATTTTTTATTCGTAAATCAACTGAACAGGTAGGATATGGGAGAATTATATTTGCTGTTTGCTAAAGACAAAAATGGCATGTTATATGACACCTATCATGCCCGGCTAACATCTGACATTGATTACTATTGCACTCAATGCGGACGTCGCATTGATTATCAAAAAGAAGTTGAAATTGGAGACTTCAAACAA # Questionable array : NO Score: 2.61 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAAACAACCCCCTTGTTCGCAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 12391-11934 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYSO01000012.1 Klebsiella quasipneumoniae strain 14WZ-34 NODE_12_length_149552_cov_29.394334, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 12390 28 100.0 33 ............................ CGGCAGGACATCCCATATCACCACCGTGCCGTC 12329 28 100.0 33 ............................ CATCGTACAAGCCATCGCCCGCGACGTCCTGGC 12268 28 100.0 33 ............................ CGTAAATAATGACTTCATGTGCTGGCTTGTAGC 12207 28 100.0 33 ............................ TATGGCGAGACCGATCAGGTGTCGTTTTTTAAA 12146 28 96.4 33 .....................T...... CAGGTGGATGCAGCTGGAGGAATTGCTGGCTTC 12085 28 100.0 34 ............................ CGAGCAGGGGAGCCACAACGCGAGAGACAGCATG 12023 28 100.0 33 ............................ GGTCAAAACCGCGGCCCCGGCAACTCAACGGGA 11962 28 82.1 0 T......A....TC..........C... | C [11940] ========== ====== ====== ====== ============================ ================================== ================== 8 28 97.3 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAGCGGCTCTGTATCGATCTGGCGTTTTCGCTGTCGAGGGAGATGGCGGGTCGATATGATAAACATAAAGTTTCTGAGGCATTCAGAAAACGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCCGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATTTGCCGCCAGCGGTTCGTGGACGAATGAAGCTATGGTTTGTCGAACCCCGGCCAAATGTTTTCGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTATCTGATGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAATATTCCTCAGCCGCCTGGTTATGAAATTCGCTACAAGGGGGAGGTCAGAAAGCCGATTATTGAGCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATTCGCGGATATAGTGGTTGAGTTGATGCTCTTTGACAATATGTTGGT # Right flank : CGCTCAGCTTACCCCGCCAGATGGCACACGGCTTCAATATTGTGCCCGTCTGGCGCAATCACAAAGGCGGCGTAGTACCCGGCGTGGTAGTTGGGCCGTAACCCCGGCGCGCCGTTGTCCTTTCCTCCGGCGGCCAGCGCTGCCTGCCAGAAGGCGTCTACCTGCTCGCGGCTGTCGGCGCGAAAGGCGATATGCAGCGGCGCCGGTTTGTCCGCACTTTGATAGAGACACAAAGAGACATCGCCGCTGCCGGCCAGCTCTGCGCCGTAGGTCGGCTCGCCTTCATCGACCAGCGTTACGCCAAGCGGGGCCAGAGCCTGTAAAAAGAACGCTTTGCTGGCGGCATAGTCGCTGACGCCGAATTTCACATGATCGAACATCTCTTCTCTTCTCCTGTGGACGGGGTATCGCCAGCCGAACGCGTTAGCCGGGAAATAGATGCAAAATAGTTAACAACGGGTAGTAACTTTTTTAACAGCTCAAAATGTTTAATTATTCCT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 21738-21100 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYSO01000012.1 Klebsiella quasipneumoniae strain 14WZ-34 NODE_12_length_149552_cov_29.394334, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 21737 28 100.0 33 ............................ CTGCTCGGATTCCGGCTGCACCTCCATGATCCG 21676 28 100.0 33 ............................ ATGTGACCGGGTGACCGGGTGAATGCATGCCGA 21615 28 100.0 34 ............................ CTGCGATAACGGGGAGTTGTGACTCTTCTACAAG 21553 28 100.0 33 ............................ CGGCGGAAAAAGCCGGGCTGGCCAGGTCCTATG 21492 28 100.0 33 ............................ CATCGTCCGATAGCCGTAATCGTTGGGGTGTAG 21431 28 100.0 33 ............................ TACCCGTTTGCTAACCAGACCGTTGCCGCTAAC 21370 28 100.0 33 ............................ TTCTGCCTGAGTCATTACGGGAACCACGGATAG 21309 28 96.4 33 ..................T......... CATCACAAAGCAGCAGGTGGCCGAAGAAGTCGG 21248 28 96.4 33 ...........A................ TATCATGATGCGTACCGAGTGGGGGGCTTCGCT 21187 28 96.4 33 ...........A................ CGCAGAAAGCACGCTGGCTTCTGCTATCAGCGC 21126 27 96.4 0 .....................-...... | ========== ====== ====== ====== ============================ ================================== ================== 11 28 98.7 33 GTCTTCCCCACGTGCGTGGGGGTGTTTC # Left flank : GGGTCAGCGTCGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGTCTTGACGGCGCGGCGCAGGATAACAGTCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGCACCGAGGGTGACGACTTTCCGCTACGCGCCTACGGAACCGCGCTGCGCGATGCTGAACACTGCCATCTGACGCTCCCGGCGGAGAATGTGTGGATTTTTCCGCAGCGGTAACTACGCGAAGCCACGGAAGGCAAGCGTCAGGTTATAACGCTACGCTATGGGATGACAAAAGCACTTTGCGTCCGGCTATGGCCGGGCAGGCCAGTAGGCTAGACCGATCCTGGTCAGCAGCCAGTCGACGGTGGTGATAAGGGGAGATACTTTTTCGTTTGATGAATGTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : TCGTGACCGTTTATCTGATGCAGACGCATCAATACGTGACATTATGGTCCTTAACGTACATCAATGTCTTCGATATTTCGTTTAGCCAGCTCCGTCCTATATAATTTTTATATGATTTCACTTATAAATATTCGTGAACTATGTTTGTTTTATACTTTCTAAAATGACGTATAAAGCGTTAGGCTTTATGACTCATCTGGAGATATCGCTCTTCCTATTAATTATTTTTAATTTTTTATATTATTATTTTGGGTTTTTATAATAAATTCAGTCTGTTGTGTGTGCTTTTTTATTTTATAAAAAGTTATTTATAAATCCCCCTATTTTTAGTATTAATAAAGGGCACATGATTTTTAAGGAAAAATTCCATGAGGCGCTTAACCAGGGTTTCGCTTCAAAATCAACATGCCACCGCGGCGATAAGTTATGAAAACTGCCCAGCGAAAACCCGAAGTTTGAATGATGGCCGCGTGGTGCAGGGACGCTCGGTGTTGAGCCAT # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGTGCGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //