Array 1 27154-25998 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSLR01000006.1 Staphylococcus pseudintermedius strain GL0010B NODE_6_length_135777_cov_27.879698, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 27153 36 100.0 30 .................................... AAGAAGAACAACGTAGAAGTCATATTTTTG 27087 36 100.0 30 .................................... GGCTAAGTATATTAATAAACTTAAGCAAGA 27021 36 100.0 30 .................................... TCCACCCTCACTGTCTACAGTAACAATTTC 26955 36 100.0 30 .................................... TTATTTTAAGTTACAAGTTTTAGCAAATAA 26889 36 100.0 29 .................................... AAATAATTTGGATAGATCAAAAATGTGCT 26824 36 100.0 30 .................................... TGTATGAGATGATACCCAAATTTAGAGCAT 26758 36 100.0 30 .................................... TTTAATTGATGTTATCGCAACAGGGTCGCG 26692 36 100.0 29 .................................... TTATCGCATATTGAAATATATGCAACGAT 26627 36 100.0 30 .................................... ATCTTTTCTACCTTAGGTACATGTTTGTCA 26561 36 100.0 31 .................................... AGCCTGGAAGTGCCCCAATGTCGTCTGAAAC 26494 36 100.0 30 .................................... AGATATAGAGGTTATCATCAATAGCGGCGG 26428 36 100.0 29 .................................... CTTTCTAAAAAACGTTGATACGCTTCTTT 26363 36 100.0 29 .................................... AATAAAAAAGGGGAATAAAGCAGTTATAT 26298 36 97.2 30 .............................A...... CTCACAAACTAAGCCCGTATGTTTTTAATT 26232 36 97.2 29 .............................A...... ATCAAATTGCAATGTTGCAACCATGTGTA 26167 36 97.2 29 ............................A....... TAAAATCGTGGCACATTTTATTAAGTAAC 26102 36 97.2 31 ............................A....... AAAATATTTAGCGGAATCTTTACAGGTCAAT 26035 36 88.9 0 ..........................A.T..C..C. | C,C [26005,26008] ========== ====== ====== ====== ==================================== =============================== ================== 18 36 98.8 30 GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Left flank : TTTTAATTATATTATTTCCGGAATCACATCTTGGCATACACGATATTAAAAAGTTTATACACCTTATAAAGAGATATAAATTTACCACGATTATTTTTACTAATCATCCTTCTATCATTATTAACGAGGAAAACATATTTCTTTGTAAAAGTAATAAGAAGTGCCACGACATCGAAAAAATATATGAAGAATTAATGTTATTTGTTCCTGAAGAAGTAGTGAGTCATCAATTAGTTAACATGATTGCATATCACGAATTCGTTGGTGAAAACCTTTCCGAGTATGAGCGATATTTTAAGTTTATCAATCATTACAATTAGGCTATACTATATTTAACATTATATGATAGAGAAAAGTTGATCCAACGATGAAGTAATGACTATGTGACTTCATTCGTGATGAAGAGGGTTAACTTTATCATCGAGTATCATATCTGACTTCTTTTAATAGTGCCAAGCCTCAATTTTGAAAAGGATTGAGTTAATGTTTTTGGATTTGAG # Right flank : TTCTTTATAATCGTACATCAACCTCACTATGCTTTCAAAATAATTAAGAGGCATTGTGGGCTTTTTGTGTTTATACGAAATGTTGTATGAATCTCTCAATCGTGCCACCATGTTATAATAGGTATAAATTGTTCATAAAAGATAAATAGAAAGCAGGGGAAATCTATGGAAGCAATTATTGCAACTCAACCGTTCCAATTAGCAGAAGGTCAAAAGTTTGAAAAAGTATCGCGTGAGCTCCCAACACCAGAGGCGCATGATATTTTAATCAAAGTGTACGCAACAGGGATCAATCCGGTTGATACGAAAATGCGGCAAGCCCCGTTAAATGCTGAGGCACGTGTCCTAGGTTTTGATGCGGCAGGTGTGGTTGAAGCGGTCGGCGATGCGGTTACGGATTTCAAACCGGGTGACCGAGTATATTATTCAGGATCGAATCAACGAGATGGCTCAAATCAGACGTATCAGCTCGTGAATGAAAATTATTTAGCGCATATGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAGGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //