Array 1 2798501-2797679 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP022086.2 Escherichia coli O104:H4 strain FDAARGOS_348 chromosome, complete genome		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
   2798500	    29	  96.6	    32	............................A	GGAACTGGCGCTGCTGGAGCAAAACCCGGTAT	
   2798439	    29	 100.0	    32	.............................	AAAAGGGCCGCATTGACGGCCCTGTGTTATCG	
   2798378	    29	 100.0	    32	.............................	TTAGCTGTTAGCCAAACATGTCGACCTGTTTG	
   2798317	    29	 100.0	    32	.............................	GGGTGGCGGTGGTGCTGTAATTCACACCGGTA	
   2798256	    29	 100.0	    32	.............................	TATTCCCCCAGTCACCCCCGCCACCAAAATCA	
   2798195	    29	 100.0	    32	.............................	ATTTTTCAGACTCATCAAAATAATCCTTTAAT	
   2798134	    29	 100.0	    32	.............................	CATTGCCTTTGCAGCGTCTTTCCGATCATTCA	
   2798073	    29	 100.0	    32	.............................	AACGTGAGATACGCCTCCCAGCGGCGCTCGGT	
   2798012	    29	 100.0	    32	.............................	CCGTCAAACAGTATCACCGCGTTAACGCCCGC	
   2797951	    29	 100.0	    32	.............................	CCACACACGTCGAGCTGGTGGGGGTTAATGCT	
   2797890	    29	 100.0	    32	.............................	ACACCTCTACTGACGTTCCTGAACAAGAAGAT	
   2797829	    29	 100.0	    32	.............................	AAACCGGACGAGGGCGCGCTAAAACGTGATTA	
   2797768	    29	 100.0	    32	.............................	CCTCTCAATTTGTAACGTCTGCAATGTCAGGC	
   2797707	    29	  93.1	     0	..........T.................A	|                               	
==========	======	======	======	=============================	================================	==================
        14	    29	  99.3	    32	GAGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA
# Right flank :  CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATATTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [2-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.65   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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