Array 1 544651-550904 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHMK010000001.1 Schaalia hyovaginalis strain DSM 10695 Ga0374034_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 544651 28 100.0 33 ............................ CTCGTCGACCCGACGGATACCGCGTGGCACGCA 544712 28 100.0 33 ............................ GCCCTGGATGACGCTCTTTCCTGCGTTGAGCAG 544773 28 100.0 33 ............................ GACTGCTTTGCTCATTCGATGCTCCACACGTCG 544834 28 100.0 33 ............................ CTCGGACCAGACCGCGACATCCCAGCCCGGAAG 544895 28 100.0 33 ............................ CTCTTCCGCAAGGACCCCACACCATGGCAAAAG 544956 28 100.0 33 ............................ GGACCCCCTCATGCCCACCTGGACCATCACCGA 545017 28 100.0 33 ............................ CCACTGGTAGTCGACGGGGAGTTGGATGCCTGC 545078 28 100.0 33 ............................ GGGGTGTGTGTATGTATAGGGCTGCGGTTCGAA 545139 28 100.0 33 ............................ TGCTCTTGGCGATGGTGTCGAGCGATGGGCGGA 545200 28 100.0 33 ............................ CCGAGGATGCGGTCCGCTCCCTCGGCCACCAGG 545261 28 100.0 33 ............................ GCCCCACAGGGTGGCGGACTTGACTGCGGACAC 545322 28 100.0 33 ............................ CCCAAGAAAGACACCATCTCATGAGCCTTGTAA 545383 28 100.0 33 ............................ GCCGACGAAGCGAAAGAACGCTGGAACGCTTCC 545444 28 100.0 33 ............................ CAGCGGGTCTAAGCCTGTGGATCTTGAGGTGCG 545505 28 100.0 33 ............................ GCGATCCGAGACCTGTGCGAGTCCAACGGCCTG 545566 28 100.0 33 ............................ GGGCAGCAGGAGCAGGCGGTTCTCGAGGTCGTT 545627 28 100.0 33 ............................ CCCTCTGCGCCTTACCCGCTCCGCCTGCATGCG 545688 28 100.0 33 ............................ GCCTCGCAGAAGGCCGGAGTGTCCACGAAGGAA 545749 28 100.0 33 ............................ CCGGAGCGCCATCGAGTGTGACCTCACGCAACA 545810 28 100.0 33 ............................ GTACCCGACACTGACCCCGGCTTCGACGAGTTC 545871 28 100.0 33 ............................ CTGTCCCGGGCACGCCGTGGGCGAAAAGGCCTT 545932 28 100.0 33 ............................ TAGTGCAAGCGGTTTGAGGGGAATACTTGGGAT 545993 28 100.0 33 ............................ GGAGCGACGAATGATGCTCGGCCGGGGAAGGGA 546054 28 100.0 33 ............................ GGATTGCTGTGTTTCCTTGGTTTCCTGCCCCGT 546115 28 100.0 33 ............................ GACGGCAGTCGGATACGGTCACGCCACCATCAC 546176 28 100.0 33 ............................ GGAGACGGTGAACCAGTATTCGCTGTCGGTGGC 546237 28 100.0 33 ............................ CCCGGCAAAGCTGATGGTTCCCATGAGTCTTCC 546298 28 100.0 33 ............................ TACAGTGCGCGGACGTGGACTCGTCCCACTGGC 546359 28 100.0 33 ............................ GGTCAACGGTGTGAGCTTGATCGATTGGGCAGG 546420 28 100.0 33 ............................ CTGTGCTGTCACCTGTTGCCACGTCAGCGGATA 546481 28 100.0 33 ............................ CCGGACATGACACCACATGACCGGGTATCACAA 546542 28 100.0 33 ............................ TTCAGAATCGCGGCGAAGAACGAGGCGATTCGT 546603 28 100.0 33 ............................ GAAGAGGGAGGCCCGATCGTGACGGGCACCATC 546664 28 100.0 33 ............................ CTCGACGGCAACGAAATGGGCCGATACGAGGCG 546725 28 100.0 33 ............................ CACACCCTCACCATCCTCGAGCAGGCAGGATTC 546786 28 100.0 33 ............................ GCACAAGGCGCCACAGAGGAAGAACTGCAGGCC 546847 28 100.0 33 ............................ CAAGACACCGAAGGTCACCGGGAAAGGCCAGAC 546908 28 100.0 33 ............................ TCATGGCCGTTGATCGTGATAGTCCCAGTTGTC 546969 28 100.0 33 ............................ CAAGAACCACCATCATCCGAAATGTCCTTGACG 547030 28 100.0 33 ............................ TGTCCCCGCCGGGCATCCTGGCGTTGAGGACTT 547091 28 100.0 33 ............................ GACTGCGAGGAGGTTTCCAGCCCCGCAGGTCGG 547152 28 100.0 33 ............................ GCGGCCCGCCTCTCGATCCGCATCTGGAAGCGA 547213 28 100.0 33 ............................ TCGAAGTCGAGTTCGGCGACGTAGACGAGGTGC 547274 28 100.0 33 ............................ GTGCCACTCGAGGAGATCGCAGACAACGATTGG 547335 28 100.0 33 ............................ TGGCGGCGACCGCTTCATCGAGTTGCCTGCGGA 547396 28 100.0 34 ............................ GCCGACGAAGCGCAGCACCAGAAAGTGAAGGAGC 547458 28 100.0 33 ............................ GTCAACGCGGCGGCACGCGAGGCCGCCTACCTG 547519 28 100.0 34 ............................ GGAGCCGCCCGCTACCGCGACGACCCCAACCGCG 547581 28 100.0 33 ............................ GCACCCACCTTCTTCCACATCGTTGTCGGAGTG 547642 28 100.0 33 ............................ CTGACGTGAACCGTCGCCCAACGATGCGGGAGA 547703 28 100.0 33 ............................ TCGAACCCCTCCAAACTGTGGCCCCGTGACACA 547764 28 100.0 33 ............................ TCGATGACGATCTCATGCGACGCATACGCGTAC 547825 28 100.0 33 ............................ CTCAGTGGGCCTGCGCCCCCACGACCGGGCGGC 547886 28 100.0 33 ............................ GCTCCCCACGGCGCACCTGCTCATAGATCCGCT 547947 28 100.0 33 ............................ GAGCGCGAGCAACGCCGCCCGCACACCACGCAG 548008 28 100.0 33 ............................ GAAGACAGCGCGGATGCTGATCGGCTCGTCGAG 548069 28 100.0 33 ............................ GGCACTCGCGAACCTCGTCAACCAGGGGCAGGC 548130 28 100.0 33 ............................ CGGAGCACTAACGATGACCGTCAAGACAATGAG 548191 28 100.0 33 ............................ GCCCTTGGCCGGGTCTTTCTCTACGGGAACCAT 548252 28 100.0 33 ............................ TCTGGGTTTCCGCGTCGATGTTCTGGAGTTCTG 548313 28 100.0 33 ............................ AGCTCATCAGAGACGAGCTCGACAAAGCCGACG 548374 28 100.0 33 ............................ CTGTCCAGACCGCCACCCGGACTCGTTGAACTG 548435 28 100.0 33 ............................ CTGGTCGCCGTCTTTCAGGCGTCGCATGAGAGT 548496 28 100.0 33 ............................ TCTGCGAGGTGCGCGTCCTCGGCTGCCTGATGG 548557 28 100.0 33 ............................ TGCGGGAAACGCTTCCAGCATCTCGGGACGCAT 548618 28 100.0 33 ............................ CTTGCCGGGGAGACCCAGCTTGCGCAGTTCACA 548679 28 100.0 33 ............................ GTCCGGCGAGATGTTCTTCTCGTCGGCCATTCC 548740 28 100.0 33 ............................ TCCAACCGCCGCGCCGATAGCCCCCATGGCTCC 548801 28 100.0 33 ............................ CACGCGCCCGCAGACGCCCCTCATCTGGGTTCG 548862 28 100.0 33 ............................ TCCTTGCCATGCGCTGGTGCCCATCCACAGGTT 548923 28 100.0 33 ............................ GTTCTGGCGCGTCGCCGTCCACTGCACGGCGTC 548984 28 100.0 33 ............................ GCGGCACAGGGCAGCGACCAGGTGTGCGCCCGC 549045 28 100.0 33 ............................ CTACGGGCTTTCATCCGACCGAGTAAAGATCAT 549106 28 100.0 33 ............................ GCATCCTGCGCGATCGCGCGCCCCGGCGCTCCC 549167 28 100.0 33 ............................ GGTAGCGTAGATGTTCGCGCCGCAGTCGCGTCT 549228 28 100.0 33 ............................ GGAGGAACACAATGGGACGCGAGTATAGCCGGA 549289 28 100.0 33 ............................ GGGGAGGCAGGGGCGAAAGATCGACAGGATCGT 549350 28 100.0 33 ............................ TAGCGTTTGCGTTCCTTGGGGATCGGCTTCCAC 549411 28 96.4 33 ......................C..... CGAGATGGGCCGATACGAGTCCTCAACACGGCG 549472 28 100.0 33 ............................ GCCGTTGATGTCCAGGATCGCCACGCCGCCGCC 549533 28 100.0 33 ............................ GCTTCATCAGCCCCATCGCGGTCGGCCGCGTCG 549594 28 100.0 33 ............................ GGATCCGATGGCAAACACGATCCTTTGGTAGGG 549655 28 100.0 33 ............................ AGACTACTACGCGACGGCCTGCCCGGGCCGTTG 549716 28 96.4 32 .C.......................... GGGGGGCAGGGGGTTAGAGTGCGGGCGAGGGG 549776 28 100.0 33 ............................ CACCGACACCCGCACCAGGCGCGGCATTAGCGG 549837 28 100.0 33 ............................ CACCTCGAGCAGAGCACCCCTACCACCGCCGGC 549898 28 100.0 33 ............................ CTCATCGCCGCCACCGTCGCCCTGCGCGCCCAC 549959 28 100.0 33 ............................ GGTAATTGATTCCGGCAGTCAGGCGAACAATTT 550020 28 100.0 33 ............................ GCGTCGACTCGTGTGGATTTCGTTCGAGCCAGC 550081 28 100.0 33 ............................ CAACGCGCACTGGAACGCGAGATCCGCAGCGAG 550142 28 100.0 34 ............................ TACGAGATCGCGCTCATCAGCCCCGAGCCCGCCC 550204 28 100.0 33 ............................ AGACTGGGCGATTCCATGCGGGCCAGCCGCATT 550265 28 100.0 33 ............................ TGTGGCTCATCGACGGCAAGCCGCGCCACCCGC 550326 28 100.0 33 ............................ GGCGGCGGACAACCGTCTCGCCCGCCTCACCCT 550387 28 100.0 33 ............................ GACGTCGGGTCCTGGTTGTTCACCAGGTAGATT 550448 28 96.4 33 ....................A....... GGCGTCCCAGTCGTCCCACTTGGAGGCGAGGTG 550509 28 100.0 33 ............................ GGCGGCGGCGCCGGTCAGGGCGGGGACGACTTG 550570 28 100.0 33 ............................ TGCGGTGCGGAGGGTACGGATCTCGTCGAGGCC 550631 28 92.9 34 ...........A.........A...... GGGTTCATCAACGGCATCGGGTCTATGGGGTCGG 550693 28 92.9 34 ...........A.........A...... TCGGCAACTCTGGATCGTCTCCACCGCAGGCGAC 550755 28 89.3 33 ...........A....T....A...... GGTCCGCAACGCCTGGAACGGCCTCGACGACGA 550816 28 92.9 33 ...........A.........A...... GAGGGTTTCGAGGAGGTCGGCCAACTGTTTTCC 550877 28 78.6 0 ...........C..TA.....AC....T | ========== ====== ====== ====== ============================ ================================== ================== 103 28 99.4 33 GTGCTCCCCGCGTAGGCGGGGGTGATCC # Left flank : ACGATTTGCGCCTATGGGACGAGGTCCAGGGGTTCGTCCCATCGGGAATCTCATATGCCGAACGGTGAATCGTGATGATCGTTCTCGTTCTGTCGGCGGTGTCAGAAGGTCTTCGTGGGCATGTCAGTCGCTGGCTTCTCGAGATATCGCCGGGGGTTTTCGTTGGTCGTGTGAACGCTCGGGTGCGGGAACGCTTGTGGGAATCGGTGAAAACCCATATTGGCGGCGGCCGAGCAGTTCTCGTCTTTCATGCGCCCAATGAACAGGGCCTTTCTTTCTTGACGCTTGGAGATGCCTGGGAGCCGGCAGATTTCGAAGGGCTGACCTTGATGGTCCGGCCAAATACCGTGGATGCGACAATCGCTCCTGAACTTCGACAGGATGCGATGAGTCAGGGGAAAGGGCGTCGTGGCATGAGTGACTTCGAAAGGCGAAGAAGATCACGGCGGGGCTTCCCAAGATCTGATCGCCCGATGGGGTAACATCGCTGATCAAGAAGC # Right flank : TCCAGAGGGTACACACCAAGCGGAGTGCGTGTTCGTGCGTTCCCGGCTTGTGCTGGCTCTGATCGGGCAGATGGCCCCGGCTCGGCAGTCGCGCTCCCTGTAACCGAGGGCTATTCACCTTGCTAAAAGGCTCACATGAGGGTGATCGCATCAGAGTCTTCTATGCCTTAGAAAGCGGGCTGGAGAGAGGGAGTCATGTGACATCATGTGACCACTACGAAATCGATGAACCAGAGGACTGGGATCGTCCGACTCCTCCGCGCGTCCGCCACGCGAGCCGCTATGTCGATGGGAGTGCGGTTATCGGCGAAGTCAACGTCACCTTCAATCGCAAGACGTCCTACAACCTGTTCCCCGATTTTCTTCACGCCTTCACACAAGAGCAGATCGGCATCATTCGTGAGGAGCTGCCGTTCTGGTATGACTTCTTCAAGCCCCGCATCACCTCGTGAATGCGAGCCTCGCGGAGCTGTCGGCCCTATCTTCGGCGCTTCGGATCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTAGGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //