Array 1 116254-118023 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJZF01000002.1 Bifidobacterium longum strain ICIS-505 NODE_2_length_399263_cov_56.8536, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 116254 36 100.0 28 .................................... TCCAGTTGAACGCGCAGTGCGACCGCTT 116318 36 100.0 28 .................................... CGAAGACAAAAGATAGTTCTGATGATTG 116382 36 100.0 28 .................................... ATGGTCTGGCAGTTGCTTGTGTAGCTGC 116446 36 100.0 28 .................................... GCAGTGGCGTGAGGAGATCAATCGTTTT 116510 36 100.0 28 .................................... GTACGGATATATGGCGGTTGCCGCCACA 116574 36 100.0 28 .................................... TGCTGCTGGCCCTGTAGGGTGTCGGACT 116638 36 100.0 28 .................................... AGGAGGGCGACTTCGCTGCTGCCTCCCC 116702 36 100.0 29 .................................... TGATTAATGCAACGCAAACCAGTGCTAGA 116767 36 100.0 28 .................................... TTGGCGTCCGTGTTGACGCCGGACACGA 116831 36 100.0 28 .................................... ATTGAAAGGTGGTTTGTGATGGATGGGG 116895 36 100.0 28 .................................... TTCATAATCAACACCTCTCTACCAACAA 116959 36 100.0 28 .................................... TCAACGCATTTGAACCGATAGCGTTTCT 117023 36 100.0 28 .................................... AGCATGGTGCGCACCGCCGTGTCGGTGA 117087 36 100.0 29 .................................... GTAGAGATGGAATCAATATGGCTTCTATG 117152 36 100.0 28 .................................... TTAACGTAAGAAAGGAGCGAGGATGAAC 117216 36 100.0 28 .................................... GTAGGTACGTGGATACGTGGTCATGGGC 117280 36 100.0 29 .................................... CGCCTCGCCGCCGCACGAGAACGAGTCAA 117345 36 100.0 28 .................................... TATGGTGTAGCCAACAACAAAAACAAAC 117409 36 100.0 29 .................................... CCCTTGCGCGTACTGTGCTTGTAGGTGGC 117474 36 100.0 28 .................................... CGGGTAACAAGGTGGACATGCTCATTGA 117538 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 117603 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 117667 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 117732 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 117796 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 117860 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 117924 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 117988 36 86.1 0 ..............................TTG.AT | ========== ====== ====== ====== ==================================== ============================= ================== 28 36 99.5 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : TGCTGGAATGCTTGGGTTGATTTGGCTGATTTAGCTGTGATGGCCGCTGCGGGAATGGCCCTTGCGCGGTTGGCGGCAGAGGTTGCGGCGCGGATTGCGGCACTGATTGTTGTGCCAATTGCGTCTGCGGTGAAAAATATGGCGACGGCTGTGTCTGACTGTTTATCGGCGGATGTTCCGGCTCAGGTTGTGGCTGGAATGGAGAATATTGCGGTTGCGCCATTGTATGCCCCTGCCCCTTCATTGCCATTTCATTGGCGCATGGCGAGGGCTGAAAACCAAGATGATGAATCCTGCATGAGTTATCCGTGATTCCTGTGCGTTGGTACAGCGCGGAAGGTTGAGCAGCCGACATATGCAGGCTTGTCGGTTCACGCGAATATCTTTAAACCTATGACTTCCAATACCCTTCGTATGTCAACCATGTTCCTGCGCACCCTGCGCGAGGACCCCGCTGATGCCGATGTCGATTCAGCCAAGCTGCTGCAGCGCGCCGGCTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 88924-89268 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJZF01000008.1 Bifidobacterium longum strain ICIS-505 NODE_8_length_100021_cov_63.2665, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ====================================================== ================== 88924 27 66.7 39 G..C....C.....C...GCC....GA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG 88990 27 96.3 54 ........................A.. ATCGTCACGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AGA [88996] 89074 27 81.5 33 GG.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 89134 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [89182] 89182 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 89239 27 81.5 0 C.............C.....C....CG | GC,C [89256,89260] ========== ====== ====== ====== =========================== ====================================================== ================== 6 27 87.7 36 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : CATACGGCATAAAGGCCGGGCTCTCACAAGGGCCCGGCCTTTGTTGTTGCCACAGTGATCAACGCCCATGAGTACCTTCGATGATCATCCGCCATTCTTGATGCATGGGAATAGTTGTCAACCGACAACTAAACGTACATGGCGGCAGCACGAGTGCCTTATTCAACATCGAAATATGCAGCGCGAAGAAGCCGAAAAACCAAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATCAAGCCCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTACGGGCTTCCCGTAGGTGAGGGGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGATTTAGTCCTCGAACGGATCAAAGTCGCGACGGACGCGGCGACGCGGGCGCTCAGTACGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTACG # Right flank : GATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGGCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGAATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCGCCTTCCTTGAGCACGTCTTCGACAGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCAATCTGGTCGATGATGGCCTTGGCCTTCTCAGCAGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTGTCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACTTCGCCAATCTTCTCAACCGGG # Questionable array : NO Score: 4.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:0, 6:0.25, 7:-0.43, 8:0.6, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,0] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2126-1027 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJZF01000005.1 Bifidobacterium longum strain ICIS-505 NODE_5_length_195802_cov_54.8726, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================================ ================== 2125 28 100.0 33 ............................ GAGGTGGTCAAGGCATTCGGGGCGGTTTCCATC 2064 28 100.0 33 ............................ GGTCGAGGAAATCACGTACCGCCATTCCAGCAG 2003 28 100.0 33 ............................ GAAAACGCTTAGAAAGGAGCTCGCCAAGGAGCC 1942 28 100.0 33 ............................ GGTGAGTGTCTTCGTCCGGCAGCGTCCCTCCGC 1881 28 96.4 34 ..............T............. GACATGCGGGGGTGTAATGTTACTTTCATACAAA 1819 28 100.0 33 ............................ GTGCTTGTTGACCGCCGTCTGAATCTCGACCGA 1758 28 100.0 33 ............................ GGGGCGTATTCCTGCTCGTGATGTGGTGTGAGT 1697 28 100.0 33 ............................ GGCAGTGGAAGACCCGCGGAAAGAATGGGTGGT 1636 28 100.0 33 ............................ GCCGCCGCTGCGTCTCGCTTGCACGGACTACTG 1575 28 100.0 64 ............................ GTCAAGCCAACTCGGTGCATGTGGGGTGGCCTGATGGCAGTGTGGAGCATCCGGCTGTGACCGG 1483 28 100.0 33 ............................ GGAGGTGACCAAGATGGATGAGGACACGACGCC 1422 28 100.0 33 ............................ GCTGTCATGTTGCTCGGACGGGAAGCCGTCGAC 1361 28 100.0 33 ............................ TGAGGTACTCACAATGGCCGACGAAATGAAGGA 1300 28 100.0 33 ............................ GCGCCGGGGCGGCCCTGCGACATATCGACGATT 1239 28 96.4 33 ..............T............. TGGCACGTGCAAGTACTTGACTTGGTTGGTCTC 1178 28 96.4 33 ..............T............. CTTGGAAGCGGGTGCGTGATGGCCGGCAGTCAA 1117 28 96.4 35 .........................T.. CCCCGATAGCTGTACGTGACTTCGACCACGCCAAG 1054 28 92.9 0 ..........T..G.............. | ========== ====== ====== ====== ============================ ================================================================ ================== 18 28 98.8 35 ATCTACCCCGCACACGCGGGGATAAACC # Left flank : CCCACACGTGGGCCAAACATGTGTGCGAGCGCAACGACATCATCGCCAGCGAGAACTTCAAGCCGAAGTTCCTATCGAAAACCAACATGGCTCGCAACGCCCAAGACGCCGCCATCGCCACGAACATCCAGATACTGCATTGGCAAGCCGTCAAGAACGGTCGCAAACTCATTTCGGTCAACCCGGCATACACCACGCAGACCTGCTCCGAGTGCGGGGAGATAGCCAATCCCCCAATCGGGCTGAAGGTACGCGTGTATCATTGCCGGCATTGCGGAATGGCGAAGGACCGTGATAAGAACGCGGCGTTGAACATGCTCATCAGGGCAGGACTTGTCCCTGAAGCCCACGGGACCGTAAGACGCCATCCGGGTGCTACCCCGGAGACGCACGTCCCATCAAAGCTTAGAATCCCCCGGCTTTAGCCGTGGGGAGAAGTCAATGAGCGAATCAAATATTTCCGCACTCATGCAGTCACGAAATCCTTTGAGAATGCAAGT # Right flank : AAAGTCAAGCGAAATGCGAAACACGGCGTGTCACTTACCCCGCGCATGCGGGGGGTGGTTTCTTAAAATGTTTTCCCATTTGCCTGTTATACTGAATACGTTCACATAGAAATGAAAGAGGAAAAACAATGAGCCCTTCGGAAGCCAGTGCCACGAAAATCCCTGCCCCCTCCATAGACCGGCACTAATTGGAGTGGGGGGCAAAAATGAATCATCCAGACCAACTCAGCCGTGAATATGCAGCGATCCTTCCCGCCTTGAAAGACCACGGCTATCGAGCCGACGTGAAAGCAAGCATCGCCGACGAACGTTTCATCTTGGTCGTCAGCGGCAAACCCACCACAAGAATCTACCGGGACGGAGGATGGGTTCGCGACGATGGTGCGAGAGGATCCACTCCAGCCGACCTACTCAGCTTCTACAAGCATGAGCATTACACGGAAGCCCTGAAACATTGGACGAACAAGGATTGGCGTGGAATCGCCCGTGACCTGCTAATC # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCTACCCCGCACACGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 2 6640-6490 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJZF01000005.1 Bifidobacterium longum strain ICIS-505 NODE_5_length_195802_cov_54.8726, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6639 28 92.9 33 ............GG.............. CATTGGCGATGGGGTTGTTCGCGGCTTGGCGAA 6578 28 100.0 33 ............................ TTGGAACGCGCCGTTGCCTGTACTGCAGGCCAA 6517 28 92.9 0 .......T..T................. | ========== ====== ====== ====== ============================ ================================= ================== 3 28 95.3 34 ACCTACCCCGCACACGCGGGGATAAACC # Left flank : CGTCTGCAAGACGGCTACCTGAACGGCACTTACACGCGCGCCGACCTCGCCAACCTACGCAACAGTTTCAAAAAACCTTGCGGCTCGGATCCGAAAGCATCCAAATGGTCGTTGAACGGCATGGACTACCGCGGGTACGCGAAACCCACGCGCATGGAACAAGCCTCATGGTACGCATTCGGCCTATACGCCTACCACCAGCAAGGCAACCAATACAAACCCATGTACAAGGAAGGCGAACGCTTCAACAAAGCATTACGGATATTGGCGGATACCGGCGAAGACGTTGACGAACTTTACCGGAAACTGTTGAACACCCACAATATGCAGGAAGCCGCACCATTCTGTCTGAGAATAATCCGACTGTTGAACGAGCACGACATTCCACTGGACCACGCCCTGCTGGCATTGGACTTGGCCAGACTCAACAAACCGGACTCCGCAGACATGGTACGACGCGACTGGAGCCGACTGCTCGACTGATTGTCCACAACTAAACT # Right flank : TGTGAACCACTTTTATTGACATCTGACTTTTGTCTGTTATACTGAATATGTCCACATAAAACAGAAAGAGGAACCAATGACCAACATCATCGAAAAACCCAAGACCAACACACTCATCGAAGAATACCGCCAACAGGCACTGGCATACGGGCACGAAAAAGCAATCCGCACCTTCGCCACCCCCATGCTCCAAGCATGGGAGAAAGCCTGCGAAGGATACGCCGACGAAGACACGGAACTCGAAGGGTTCGCGGACCTCATGTCCGAAGTATTCAACGTCAGGGATGCGGCAATCGCCGCCGCCATCAACCCACGATTCAAGATCGGGACCATCATCAACCTCGCGGCGAAAGCCCACACGCCATACTATAAGAGGCTTCTTTCCAAAACACTTGCCGACGGGTTCACCAACCCCGACATCAAACCCGACCACGACCGGCTACACAATGCCATCACAGCCGCATGCGGTCTCACCGACCTTGCCTCGGAGAAGAAGTACC # Questionable array : NO Score: 3.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCTACCCCGCACACGCGGGGATAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.74 Confidence: MEDIUM] # Array family : NA //