Array 1 23706-24107 **** Predicted by CRISPRDetect 2.4 *** >NZ_SODZ01000019.1 Petrotoga sibirica strain DSM 13575 Ga0215640_119, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================= ================== 23706 30 96.7 36 .................A............ TTGTCTTTTAGCCATACAGCTACATTTCCAGTAATT 23772 30 96.7 36 ...................A.......... ATTCTATCTTTAAATTTATTATAACTCTTCTCAAAA 23838 30 100.0 37 .............................. CTTTTCTAGAATGCTGTCAACAAGTTCAGCCAAGTCG 23905 30 86.7 56 .................A.........GGG TAGGTGGAGGAATGGAAACATCGACGTTTTAACTCACCTCGATATTTGTAGTACGT 23991 30 90.0 57 ...........................GTG TGGGTGGAGGAATGGAAACGCTGAAGACATAGCAACTGAAGGGCATGAAGAAGTATA 24078 30 90.0 0 ...........................GGT | ========== ====== ====== ====== ============================== ========================================================= ================== 6 30 93.3 45 CTTTTTATCCTACCTATGAGGAATGGAAAC # Left flank : CAGGCTGTGTCACCTGTACAACATGTGGATGGTCAAAGTGTTCTTAAATAATATACAATAAGAAACAATACTAGAATTTGGTTTTGAAATAGGTGATATAGCTTTATTAAAAATTGATGGAACAAGCGTTATTGTTCCTTTTGTTACAACTTATGGTTATGTCGACAGAGGCAATCCCATTGTTGCAATAACTTTATAGCCCGCCTTCATGGCGGTTTTTTTGGTTTTATTATTTTTTTTGTTCACAGTTTAGATAAGTTGAACCGACTTAATATAAAATAATGTTAACAAGTTAACCTAATAATAACGTAGAAAAGAAAATGATGAAAAAAACCGTCTGTCGACCTCCAATAGGGTAAAAAACCCGGGGGATCGACAGACAAGCGAAAAAAGTCACAAGCCCTATTACATGCGCTTTTGAATTGAATCTTAACAAATTCTCAAAGTTTTGCTTGACAATCGTAATTTTTTATGATATAGTATTTATAAGTATCTTATGC # Right flank : TAGGGGAGGGGAATGGAAACGAGATTGCTTCAAAGCTTCGATGCAGTATGTTCTCGCTTTAAAAGGATTTTGATGAATTGAAGGCTGGGAAGGAATGGAAATAATAGAATCTTTAGGCTTCGACATGTTAAACCTTAAATTTTTAACTAAACTTTTATGAATGAAACCCAGTAAAGAAAACATGGCCTGGTAACTTAGGGGGAGATTTTTTAATTTCTTTTGCCCTTAATAATGCAAGATATAGTAAGATTAAAAACGAGCTAGTATTCCAGCTTTATAAACTTCCATAAAATGCTTTCTGATTTTTAAACAAACCTTAATAAAAGAAAGAAATGAAAACTTCTAGCTGAATTCTTTTGAAAACCATTACCTTATAACCTTTTTACTCTACCTATGAGGAATGGAGGGTGGGGTAGAGCAATGGAAACAATTTTATTTCTAAGTTTCCAAGTAGTGTTCTCTAACCTTTAAATCATAATTTTATGAATGAAAGAAAGCAA # Questionable array : NO Score: 3.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:-1.5, 6:0.25, 7:-0.42, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTATCCTACCTATGAGGAATGGAAAC # Alternate repeat : CTTTTTATCCTACCTATAAGGAATGGA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.96%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.40,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 57502-59763 **** Predicted by CRISPRDetect 2.4 *** >NZ_SODZ01000004.1 Petrotoga sibirica strain DSM 13575 Ga0215640_104, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 57502 29 100.0 37 ............................. TCCACAGATGCCTGATCAGCCAAGGCCACTGACATCC 57568 29 100.0 36 ............................. TTTTAAATATATGTATAACTTGATACACTATAATTA 57633 29 100.0 35 ............................. TGGAATGTTATACTTTTATTAGATGGGTTGTATCC 57697 29 100.0 37 ............................. CGAATAAAGCTGTTGAAGCTAAGACGTTTCTTCCAGG 57763 29 100.0 37 ............................. TCTTTATAAAAGGGTTATAAAGCTTGAAATTACTCCC 57829 29 100.0 36 ............................. TTCTTTTTTAAATATTTTAAATGAGCTTTTAATTGG 57894 29 100.0 37 ............................. ATAAACCATTCAGGCTTTAACATTTGCAATCCTACTA 57960 29 100.0 36 ............................. TATCTTCCCCCTCATTATCCCCCCTACCCCAAATTC 58025 29 100.0 38 ............................. ATAATAGCCCATACCCAAAAAGGAACACCGTTCCTTTT 58092 29 100.0 37 ............................. AATATTGTGTTCTGCGCAGGATCAAAGATGTACCTAC 58158 29 100.0 36 ............................. TTCTGCGTATGTATACCCGAAATTCTCACATATCCG 58223 29 100.0 36 ............................. AATATTGTGTGCTGCGCAGGATCAAAGACGTACCTA 58288 29 100.0 36 ............................. CAGAAACGCTTTTCTATATTTCGTGAAGTCGATTTC 58353 29 100.0 37 ............................. ATTGTTGGCCCAGGCAACACGAAGCATATACATGCTT 58419 29 100.0 39 ............................. ATACCTCCCTATAGTAGTTGGTTGCGGTGATTCTTGCCC 58487 29 100.0 38 ............................. ATTGTTTTCATGTTCTATGACTAGCACAACGTTGTTTT 58554 29 100.0 38 ............................. TCCAGCACACTATTGAACGACTGCGTACTTTTTTGCAT 58621 29 100.0 38 ............................. TCGTCACCAAACTGGCGCAAATAGTACTTGTTCAGAAC 58688 29 100.0 39 ............................. CTGCGAGGCGTAGTATGACGCATCAATTTCCATAGCAGC 58756 29 100.0 36 ............................. CTTGATAACGTTCCCATACCCCCAGTTGTAGCACAT 58821 29 100.0 37 ............................. TCGTAATTCATTATGTATTTTATATCAGTGTAAATTT 58887 29 100.0 37 ............................. CTGACATTCGTTGATAATCCCCGATCCAGATTTCATT 58953 29 100.0 37 ............................. TTTCAAGAAAAGAAGTTTCTATCAAAATATTCACAGG 59019 29 100.0 35 ............................. TTTTATTATCTTCCTCTTTATACTTCAACCTTAAG 59083 29 100.0 36 ............................. GTCGCAAACAGATATCTCAACGATCGCATACGTTTT 59148 29 100.0 37 ............................. TCTTTCACCTTTCTGCAATACTGGATGAATTCCTTGA 59214 29 100.0 38 ............................. ATGGACGCTGCTACCTTCTCAAAACCCGACAAGTTCGG 59281 29 100.0 36 ............................. TTGCCATTCCTGAAGTTCCTTTTGGTACTTTTCATC 59346 29 100.0 35 ............................. AAGACCAATCACTCTCATTCAAGCTCGTGTCTCTG 59410 29 100.0 37 ............................. TTGACACTCAGAGTATAGGTACCGGGAGCGGAGTATG 59476 29 100.0 36 ............................. TTATCCAAATATAGTCTATGCGCGGTTCTCAAGGAG 59541 29 100.0 35 ............................. TTGTAATCTTGGCCGCATCAAGGTTTGCGATCTTG 59605 29 100.0 36 ............................. CACGAAGCATATACACGCTCGCCAAAATGAGTGCAG 59670 29 100.0 36 ............................. TTTTTTCCTCCTTTTTTTTCTCTCTTCTCCCCAATG 59735 29 96.6 0 ........A.................... | ========== ====== ====== ====== ============================= ======================================= ================== 35 29 99.9 37 GTTTTAATCAACCAAAGAGGAATTTAAAT # Left flank : GATACAGTAGCGCTTCAAAGCTAGAAGCTCAAAGTATGTTCAGACAGGTTGCAAACGTTGATGTAGTTCCAGAAAATAAAATAGACGATTTTGTAAATGAGCTTAAAACCTATAAATTTTCTGATTATTCAGATTTTAAAAACAAGATACTAAACGAGTATGTTATCTCAATGAATTATTTTTTAGTGAATCAAAACCTAAAAGAAATACCCATAAACGGAGAAATAAGTGCAACAATTCGTAAATGGTTAAGTGGAATAAAATTATGTACCAATCTAACTTACGATAAAGAACTCGGAGCAGTTTTGAATAAAGAAAAAAACAAAGTAGAAAATCCATTTATTTGATTTAATATTTTATTAACAATGATAAAATCAAAAGCTTGATTAATACTGACATTTTGCATGTTCAAGAAAACCTAAAAAAATCATTGGAGGTTTGACGCAAAATGTTAGATATGAGTTATTTCTAATCCTTAATCAATCATATTTTTGATAACC # Right flank : TTGAAAAGCTGGCAGCTAATTTAAAAGAAGGAGAACCTTGTCTGTATATAGCTGCCATTTTTTCCTGGTATTACCTCGATTTTTGAATTAATTCTTTCTTTTAATTCATTTACATGAGATATTATGCCCACCATCCTTCCAGAGCTATTTAACTCTGTTAATACTTCAATCGCACTATCAAGAGAGTTTGTATCTAGGCTGCCGAATCCTTCATCTATGAAAATCGTATCTAAAGATATTCCACCAGCTTCGCTTTGCACTACATCGGCTAACCCTAAAGCAAGAGCTAGTGCTGCTTTAAAACTTTCCCCTCCTGAAAGTGTCTTTATTTCTCTTTCTTTTCCAGTGTATATATCAAAAACCATGATTTCTAAACCTTCACTTTTCCTTGCATCAAGTACCTTAGAAGATCTATGCAATTGATATCTTCCATCTGTTAATTTGTTTAATCTTAGATTCGCTTGAGATAATATTTCTTCAAAATAATAGGCTAGTACATA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATCAACCAAAGAGGAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA //