Array 1 151131-152990 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJQ01000004.1 Pectobacterium carotovorum subsp. carotovorum strain Y39 Y39.scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 151131 29 100.0 32 ............................. GCCAGCATCTTTACAAAATCCTGATAGCACGG 151192 29 100.0 32 ............................. GCGCTGGCCCTGGTCCATCAGGTAATACTGCG 151253 29 100.0 32 ............................. CGCAAAAGAAGTTGCACATTCGCTATAACCAA 151314 29 100.0 32 ............................. CCAGATGATTCTTACCGGTGCCGGGACGCCCA 151375 29 100.0 32 ............................. TGCTCTCAATTTTCAGAGCGTCTTTGCGTGTT 151436 29 100.0 32 ............................. CGGCCTAGACCGAATAAACAGGAGGAGTGATG 151497 29 100.0 32 ............................. GCGCTAGAGGGGAAACTAACCAACCTGGACTA 151558 29 100.0 32 ............................. CAAAGTTTTCAGTAGCGTATCGGCGCTGTGCC 151619 29 100.0 32 ............................. GATGTTAGAGCGACGCAACCCGGTAGCCAGCG 151680 29 100.0 32 ............................. GGCGGTTAGATGATCGCCCCAAGAAAGTTAAA 151741 29 100.0 32 ............................. CGATTAATGAATGGGCTAAATCCCCGCGAGTA 151802 29 100.0 32 ............................. TGCTCGCAACGTTTGCATATGCGGACTATTGC 151863 29 100.0 32 ............................. GGGATCTTATCCCCTTTAGCGCTAATTAATAA 151924 29 100.0 32 ............................. GATTCTTTCGAGCACATCAGAAGCAATCGCAG 151985 29 100.0 32 ............................. GGGTGGGGAATAAAGATGTCCGGGTCATCACA 152046 29 100.0 32 ............................. GAAAACTAATGCCAATAACCACGGGGATGAGC 152107 29 100.0 32 ............................. GCAGACCATCCACCGGTCGGCGGCCGAAGGGC 152168 29 100.0 32 ............................. TACGACCTGACCGACCCCGAGGGGTGGCCCGT 152229 29 100.0 32 ............................. AGGTAGCGCATGGCCTGTCTGGTGAAGTTGAT 152290 29 100.0 32 ............................. CGCTAACTGCTCACGCTGCTGTTTAATTAGGC 152351 29 100.0 32 ............................. ATTGCTGGGCCACAAATTCCAACGCACGACCG 152412 29 100.0 32 ............................. CCCGCAGCGCTGTTGGGGAGCTGACTGGTGAT 152473 29 100.0 32 ............................. CATCGCGCAAGACGCAAGCGGCTACCTCTATT 152534 29 100.0 32 ............................. CTGGACTTATCGATTATTCTTTTGAATCGTTC 152595 29 100.0 32 ............................. TAGGACATTTTCATATCCGTCCATTTCTTACC 152656 29 96.6 32 ...........................T. GGATAGGTGCAATAGGCTAGGCAAGCCAGCAC 152717 29 96.6 30 ..A.......................... CCTGATAAAGAGGAGTAAATCATGGCAATT 152776 29 100.0 32 ............................. GTGAGATAGTCGAACGCCGCCGCGCCGATCTC CA [152778] 152839 29 93.1 33 .CA.......................... GGCTCTCGGGTTTTGATAAACAATATCGAGTAC 152901 29 89.7 32 .CA........................T. GGCAAGATGATTGACGACTGCCTGCGTGAAGG 152962 29 93.1 0 .............T..............C | ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGTGGTATTACGCCGCCGCTACCGCCGGACGATGCACAGCCGCCTGCAATCCCAGAACCGAAACCGTTTGGTGATAGCGGCCACCGGGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGTTTGCGCGGCAGGCTGGCGGTGTGGCTACTGGAAGTCCGCGCGGGAGTGTATGTCGGTGATACCTCACAGCGGGTGAGAGAAATGGTTTGGCAGCAGATTATCGAACTGGCGGAACAGGGCAACGTTGTGATGGCGTGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTTTGCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGAAAAATCGGTAGAATTATTTATGCCGAAAAAAGTGTTATAAAACAACTCCCTACTTTTAGA # Right flank : CTAATCCGTGGAAATCGCTAAAGAATTAGCTGTTCTGGCTCACAGTTGTACAGCTTAGCTAGCTTTTTTCGGGTGCGTTTCTGCGGTCTTGAATCTGGGGATTCAAGCTGAGAGACGGCGGCTTGGGTAATGCCAAGTGCGGTTGCAACCTCTTGCTGTGAGAAGCCCCTAAAAATTCGCCAGGCTGCCTGTAAGCTGATGTCTTGATCAATGTGAATACTCACTACTTCATGAGGAATGGAGACATCATCCTCTTCGCTATGAGCGTAGGGAATGCTCTCATAAAGGGCGGGTTCGTCAGCGTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 153792-154737 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJQ01000004.1 Pectobacterium carotovorum subsp. carotovorum strain Y39 Y39.scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 153792 28 72.4 34 ..-..TG.T.T...TT.A........... TGGCTGCGCAATTCTGTGATGTGTGGCAATGCGA 153854 29 93.1 32 A.C.......................... GTTTGAAAACTCGGCATCAATCAGCGAGTCCA 153915 29 100.0 32 ............................. GCTCAACGCATCGAGTCTCAATTGCTAGGGAA 153976 29 100.0 32 ............................. CTATTCCGGTGAGGCGGCTGATACATACAAAC 154037 29 96.6 32 .............T............... CGCAGCATATCTCAGAACAGCCTTTCTCACAT 154098 29 93.1 32 .............T..............A TGGAATGAAACACAAATACCAGTCAGCCAAAT 154159 29 93.1 32 ............TT............... CTCAAAGAAACGACAGCCGTTTTTCTCGTAAA 154220 29 96.6 32 .............T............... CAACAGATGCTCTATGCCCTCGGCTTCTGGGA 154281 29 100.0 32 ............................. GCTGAATCTCGCATATTCGCAGATAAGCGAAA 154342 29 100.0 32 ............................. AAATGAGCGTGGCCATATGCGCTGGTATAAAG 154403 29 93.1 32 ......A....C................. GGGAACAAAGGCGGGGCTGGCGTTACAGTTGC 154464 29 100.0 33 ............................. ATCGCGGAGTCAAAAGGGCTAGGTAACTTCCGC 154526 29 93.1 32 .A..........T................ TTCGTTTTTGATACCAGTGAGCTTGAAGATAT 154587 29 100.0 32 ............................. CGCGATGTGATTCAACAGTTCGGCATCAGCGA 154648 29 93.1 32 .A........T.................. TTCAGAGATTGCCAATCAGATGCGCCGCCGAG 154709 29 86.2 0 .CA.........T..............T. | ========== ====== ====== ====== ============================= ================================== ================== 16 29 94.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTTTGCGATAAGTTTCTGGTATAACTCATACGGAACAACAGCATATTCAGGTTTACCGCTTTTATCCCGAATGACTTGTATGCTCATAGTGTATTGCTCCAACATTTTCTTGCGATGGGTAAAAATCAGTTGTGGTGTAAAGAGGGATACGCTTCCCTCCTCAATATGTCGTTGTGGTCCTTCGCTTGACTTCAAGTATCTCGCACACTTGTGGTTCGCCGTTGATGAGCTCAAAGATAATGCGGTAATCTCCAACTCGTAGACGATACCGTTTGCCAGACGATTCGAGTTTTTTTAGATCCAGATTCACATCTGGAAATGTACTAAGCTCGCCCACTTTGTCTTTGATTCGTCTTCGATATCTGGTGTCAATTGTGCCGAGTTGTTTTAATGCCCGTTTTGACCAACTAACCTTAGTCATGAATCCCTCAAACGAAAGTCTTCCCTGATATAAGTTAATTATAAGACAATTTAACGATTTTTCTTATGTTTTGTTTATG # Right flank : GGGCTTATACCCCTTGTTGCATGTTGGTCTAAATATTCCCCGCACGGGGCCAAATCCCGCTTCTGGCTGGCGCGATGGGGGATTGCGTGTCAGTATTAAAGCACGCCAGTTTTGCACCCACCGTAACGGTGAGGCGCTATGCCAATGATTTTGTCTTCCATACGTTACCGTAAGGAGGTGATATGAAAGTTGAAGCCGCAGAGTCGTCCGTTTTTTCCAGCCAGCAGGTGATGGCGAAGCGTTCGACAGAGCATGCAGAGAAAGCGGCGCTGTCCGAACAGCTTCAGTCTTATCAGGCGGGCAGCGGTGCCGTTCCTGCTGGTCAGACGACGCGGTATGATTTCACCCGCATTAGTCCTGCTGAACTGTATGACACGGTCGAAGGCCTTGTCAGCAGTGGGCGGTTGGGACGTGAAGAAGGGTCCGCGCTGCTGGGTTTTGTCTCATCGCCGAGAGCCGAAGGGGGGAGCATTCCGCCTTCCAATGTGTTCCAGCCGATT # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 169568-169895 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJQ01000003.1 Pectobacterium carotovorum subsp. carotovorum strain Y39 Y39.scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 169568 28 85.7 32 A..T.......TG............... AGAAACAACATCGGTAGGAACCGAGGGATTAA 169628 28 100.0 32 ............................ AGGCCAAATGACACCGCACGACGATTAGCCTG 169688 28 100.0 32 ............................ GACAGGAAAACAACATCGCAGAGCGTTCTCAC 169748 28 96.4 32 ...........T................ ATTTTACGGGGGTCACAATGCAAGTATGGAAA 169808 28 100.0 32 ............................ TTTAACTTTTCTTGCGCACAAACTCGTGCTGG 169868 28 71.4 0 AC.........A.C......TGA.C... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 92.2 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : AACCGACGGACGTCGGCGGCACGCTGTTTGGCGGCATGTTTAGCGCGATGTTCGATCTCATCTCCTGGTCTTGCGCGGCATCGGGTTTCTGCTTTCTGGCGCTCTTTCGGCTTTCAGGATGGCGTGTTGCCTGGATACTCGCGGGGCTGGTGCAAATCGGTATCAGCGCCCTGTGGCGCATTCAATATTGGCAGGATTATGAAAACGACAATGTGATACTCTCCCCGATGCCCGGTGAGCTGTATGTTTCCATGCTGGTAGGCGCAGGCATGGCCGCCATCGGCATCGTGAAATATCGACACGCCCTGCGCAACCCAGTCGCTCAACGCCCAACCTATGCTAAAGCCGTCGCTGCATTGCTGCTCGTTGCGCTTTATTTCGCGCTCCCGCTGCATCTCTACCTACGTGAACCTCTCCCCTACTGCGCCTTCAGCCCTGACGGCCAGCAGTTAAGTATCTGTCTGGGAGAGAATGACGAGCGGATTATTGTGGAGTGATGG # Right flank : AATTAAACGCGCCGAAAATCAGTAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCCGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACTAACGGCCGCCTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCGCTAGAACAGGCACAGCTGATTCTCGGCTACCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTAATTGAAGTACGGTTGATCAATCACACCAGCGAATACGTTGAACGCTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGGCTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAAAGCG # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 178390-176321 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJQ01000003.1 Pectobacterium carotovorum subsp. carotovorum strain Y39 Y39.scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 178389 28 100.0 32 ............................ GTGATCGATGGCGTCTTTCAGGGTGACGATCT 178329 28 100.0 32 ............................ CCCTCGTTCAGGTGGAAAAAGAAGGCATCGTG 178269 28 100.0 32 ............................ TGTTGACTGGCAGATTGACGACCGATCAACCA 178209 28 100.0 33 ............................ ATCACGACCCATTGCAGAAACTGCCAGTTAAAA 178148 28 100.0 32 ............................ TGGGCTTCCAGCGTCGTGATGCGTGTGCGTAG 178088 28 100.0 32 ............................ GAACTGCGCAGTCAATCCAAATGTGACGCCGT 178028 28 100.0 32 ............................ GCCCATCAGACCGATGCTCACCGTGCTGTCAT 177968 28 100.0 32 ............................ TCTGCATTTTCTGGGTTGCTGCCGTTATTCGT 177908 28 100.0 32 ............................ AGAGATTTATGCCGCGCTGAACGCTGAGTTTT 177848 28 100.0 32 ............................ TAAACAGGTTTTGCGCGGTTCGCTCGTTGTCG 177788 28 100.0 32 ............................ AGTGACGCAGACGAGAACCTGCGCCCCACACC 177728 28 100.0 32 ............................ GGCAGAGAACGGCTATCAGCGGTTGTTTGTGC 177668 28 96.4 32 .............G.............. TCGCGTAAAAAATTGGCAAAACTGTTATTCAC 177608 28 100.0 32 ............................ ATGGCAGGAAATTCATATTTACACCGGATGCC 177548 28 100.0 32 ............................ AGAAAATGAAGGCCCTGATGCGGGAACGATCG 177488 28 100.0 32 ............................ GCCGTCCAACTCAGCTCAGTTGCTGGACGAAA 177428 28 100.0 32 ............................ TGCGCGTTGGTGATTACGTCATCATCGATATT 177368 28 100.0 32 ............................ GAACGCGGCGCAGATGCAGCAGCTGGCCGCGC 177308 28 100.0 32 ............................ GAGAGATTAAGCGCCAGGCAATAACACGAAAC 177248 28 100.0 32 ............................ AATCGCCCGCCCGGAAATTCTCGATGCGGTAT 177188 28 100.0 32 ............................ ACCATTTGAATTCGGATTTACCGACAGGAACG 177128 28 100.0 32 ............................ GCTCAAACCGGGCAGGCAGTTAAAAACGCAAA 177068 28 100.0 32 ............................ GCAAAAAACAGGCAGCAGACGCAAGCGCTAAT 177008 28 100.0 32 ............................ TGAATATATCCAGACACCAACGAACACGCCTT 176948 28 100.0 32 ............................ ATTATAAGGAATATCATCATGTTTACATTAGC 176888 28 100.0 32 ............................ AGTAACATCTTTAGCAGCGTAGAAGCGTGAAT 176828 28 100.0 32 ............................ AGCAATAGCGACATGCGCGGTATCAGCGTTTC 176768 28 96.4 32 ...........G................ GGAGATCAGCACCGGCCACTCAATCACCAAAG 176708 28 96.4 32 ...........C................ CGCATCGCTGACGCCGATAATCTGCAACTGCA 176648 28 96.4 32 ...........C................ AGCCCACACATTTTGTTATTTCTCGTATCAGG 176588 28 96.4 32 ...........C................ GGAACGGATGCGGCTATTCCATTAACCGCATG 176528 28 92.9 32 .........A.C................ TGCGTAATACGCTGCGCTGGCAAGTTAACGCC 176468 28 96.4 32 ...........C................ CGTATGTCGCTGACAGAACGCGGCGTAGGCGT 176408 28 96.4 32 ...........G................ GTAATGCGACAGGTTTGCGTCCGAACCTGATG 176348 28 75.0 0 ...........C.C......T.C.TCC. | ========== ====== ====== ====== ============================ ================================= ================== 35 28 98.4 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : CTGCGTGACGGAGGTGCCGGTCCCCAGCATCACCACGCTGGTATTGGCGATGGGGATATTCCAGTACAGAGACTGGTTTCCTTCTTCCGTGACATATTCGACACGGCCACCGTTAACGAGAATGCGGCAATGTTGGAGGTAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGGCTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCTGCGAATAAGTCGCAGGCTAACTATTTGATAAGAAAAAATATAATCTTCAGGAAACTAACGAAAATCAGCCTATCACAAATATTCTGGGAAAATGGTGGCTGCGAAAAATATTACCCAGACGCAGACCCTTTTTATTTGGCCTATTTCACAGGATTAAAAATCAATGAGTTACCGCTGAGCTGAAAAAAAGGGTTTTTGCGGCGAAAACGTTAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCAAC # Right flank : CGACCTTAAGCGCTGTTGTCTGGCTATTATCGAGGTAGTACTGCGCCAGCGCTCACCCCCTTAAATAACGCATATTGATGACCTTCTTTCGTAACGTTTTTAAGTAATAAGTTTCTTTTTAAGGGAATGCAAATTGTGTATTGGGTATTATTAATATTTAAAAATCATCATTTTTCCGTTAAAGTGTCCTTACAGGGAAATAGCGCGTTGACTTAAGTCAAATTCAAGGGAGTGAGATGACTGTGAAATACGATCCCGTTTTAAAAACGCTTGTGGATGATGACTATCGGTTAGAAGAACATCTTGATTTTAAAAAGCAGCATGCAGATATTAATTATCAGAAATTACATGCTCAACTAAATGAAATAAATAACGATAACATTCATGCCATATTGACTGCGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAACGAATCGTGGAAAACGGCGATATTTGGCTGTACCGATCCTACTTCATCGTTT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 187380-188787 **** Predicted by CRISPRDetect 2.4 *** >NZ_JUJQ01000003.1 Pectobacterium carotovorum subsp. carotovorum strain Y39 Y39.scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 187380 28 100.0 32 ............................ AGAATTCCCATGACGCGGTTAAACCACAACTT 187440 28 100.0 32 ............................ AAAGAGTCATGGCGGAGCGCCACGGTAAAACA 187500 28 100.0 32 ............................ GTAAAAAACACCGTAATGCATCATGCGGGTGA 187560 28 100.0 32 ............................ TTGCCAATTCTGATTGGTGGATGTGTGCGGTA 187620 28 100.0 32 ............................ CATCACATTCAGATAATTAACGCTCAATTAAC 187680 28 100.0 32 ............................ ATAAAGGCGATAATCCTTCCATGTTGATGCAA 187740 28 100.0 32 ............................ CTTGGTTCTCGCCATCTTGTGCCGCCTTTGGT 187800 28 100.0 32 ............................ TTAGCTGCATGCCCTTCAATGCGCTCCTGATT 187860 28 100.0 32 ............................ GACATCATATCTTCAAGGTCTTGCACTGAGTC 187920 28 100.0 32 ............................ AGGGCACCCACACCGCCCGATCAACGGATTTT 187980 28 100.0 32 ............................ TAGCGCGAGAACACGAACCCATTGCACCATGT 188040 28 100.0 32 ............................ ACCGTGCGGCCATCTGACCAGTAATTGCCGTC 188100 28 92.9 32 ...........C.....T.......... GATCAGGGGATGTGATTCATGTGTCAGGGCGA 188160 28 85.7 32 ........T..C.C...T.......... CGACCGCTGGGAAGCTGCTGACACACCCGAGC 188220 28 100.0 32 ............................ GCAGCAACTCCCTGTCGTCATTTACAAAATCT 188280 28 96.4 32 .................T.......... TTACCTGCCGACTGTCTTTTACGCCAGTCAGC 188340 28 92.9 32 ............G....T.......... CAGCGCAGAACCACCCAGGCTAACCCGCGTAT 188400 28 92.9 32 ............G....T.......... GTTCTGGAACCATTCAACAACCTGCACCAAAT 188460 28 89.3 33 ............G....T......A... TATGGGAAACATGACAGAATGCTATCTGTCACA 188521 28 100.0 32 ............................ AGCAGCAAACACGCATTGGCCGTACCTGGACC 188581 28 92.9 32 T..........C................ GGTAAATCACGCCCCTGTCGTCGCAAGCGCCA 188641 28 92.9 32 ...........C.C.............. AATGTTCCAGTGATTTGAGAGGAACTCCTTCG 188701 28 89.3 32 ..........AC.C.............. TTTATCAAACGCGAAAATGCGGGATTCGGGAT 188761 27 82.1 0 ............GC.......-....TT | ========== ====== ====== ====== ============================ ================================= ================== 24 28 96.1 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCGCTCTCTACATTGGAGCAAACGGCCTGGCTGAAAGGATTGCGGGATTACACGCAGGTTTCTGCGTGTACAGCCATCCCTGACGGCGTGAAATTTCGCACCGTGCGCCGCGTTCAGCTCAAGAGCAGCGCCGAACGGTTACGCCGACGCTCGGTGAACAAAGGCTGGCTAACGGAAGCGGAAGCCGCAGCACGAATTCCCGATGCGGTGGAAAAACGCAGCGCACTGCCGTTTGTGCAAATCAAAAGTTTGTCCAACGGGCAGATGTTTTTCGTGTTTGTGGAACATGGCCCGCTACAGGACACCCCCGTCGCTGGCCGTTTCTCTTCCTACGGTTTAAGCGCAGAAGCCACCGTTCCGTGGTTCTAACCCTTTTTTAGCGGCCAACTGCAAACTATTGATTTTTAATTGCAGTTGGTCGCCCTAATAAAAAAGGGTTTTTCGCCAAAAAAGTCATATTCTCTTTAACAATCTGGTAGTTAGTGTAAAGCCTTAACG # Right flank : TCTTATCAGAATGCGTCGCTGGCGCGACGCATTTCGTGGCGTTATTCCCCGTTGAGCGTGACAACCAGCAAGCGGCTGCCGCCGTGGTTGCGGTGTTCGCACAGGTAGATGCCCTGCCAGGTGCCAATATTCAGGCGTCCGTTGGTGATGGGGATTGTCAGGCTGTTTCCGAGCAAGCTGCCTTTCAGGTGCGCGGGCATGTCGTCGCTACCTTCATAAGTATGACGGTAGTACGGTTCATTCTCCGGCACTAAACGATTAAAGAAACTCTCGAAATCCTGCCGTACCGTGGGGTCGGCATTCTCATTAATCGTTAGCGCCGCCGAGGTATGTTTGATGAACACCTGCATCAGCCCGACTTTTATCTGGCGCAGTGCGATAACCTGCGCCAGTATTTCGTCGGTCACCAGATGGAAGCCTCTGCTTTTCGGCTTCAGGCGGATTTCATATTGCGTCCACATCGGCGTCCCCTGCTATCAGGCTTCACGCGCCAGAATCGG # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //