Array 1 44293-43399 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RHNV01000010.1 Companilactobacillus allii strain JCM 31938 contig10, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     44292	    36	 100.0	    30	....................................	AAAAAAATTGGTAGTTCTTTCACAGGAGCA	
     44226	    36	 100.0	    30	....................................	AAAACGTTAAAAATAAACTGAGTCTCGTGT	
     44160	    36	 100.0	    30	....................................	CTAGAACTGCTGACAAAGCGACTTTTGACA	
     44094	    36	 100.0	    30	....................................	AATGAAGTACTAGTTAAGAACTTTAATATG	
     44028	    36	 100.0	    30	....................................	TGTTCTAAAAATACAAGAGGCAACCAAGCG	
     43962	    36	 100.0	    30	....................................	ATATATGTCACGTAGCAAATCAGTAAACTT	
     43896	    36	 100.0	    30	....................................	TGGCGTCAGCGTCAATGTTTGCCATGTTGG	
     43830	    36	 100.0	    30	....................................	TGCTTTGAGTAATTCTTCGATTCTGTTCTC	
     43764	    36	 100.0	    30	....................................	AATGTTAAACAAGATTGAGAGTCAAGCTAC	
     43698	    36	 100.0	    30	....................................	TGTAATATGCTATAGTGAGACTATTAAATA	
     43632	    36	 100.0	    30	....................................	ATTTTTAACGTTCTCAATGAGTAATATTGA	
     43566	    36	 100.0	    30	....................................	ATCTCCTAAAGCAACAATCACGCAGCTAGA	
     43500	    36	  97.2	    30	................T...................	AATATTGAGTGAGCCCCGTACAGTAACACG	
     43434	    36	  88.9	     0	.......C........T..............A..A.	|                             	
==========	======	======	======	====================================	==============================	==================
        14	    36	  99.0	    30	GTTTTAGTAGTATGTCATTCTTAGTAGTTTAGAACC	                              	       

# Left flank :   GACTAGTTATAATATCAATTCTGTCGGCAATTTGAAACTAGTATTTCAAAAGATCGTCGCTGATAACCAAGTAATTAACCGAGATAAACTAGAATCATTAAACAAATTAACGAACTTGTTTTTGATTCCATCAATGGTTACGACGAAAATTTTTATTATGATTTAATGCCAGAATTAACAAAATTACTTAAATCAAAAGAACTTTCAATAGATACTAGTAATTGGCAGAATTATTATGATAAACTTCAATCAGTTATTAGATTTTACGTAGAATTCGATAACAAAAGATTGTTATTATTTCATGGGTTAGAACGCCTATGTAGTTTGGAACAAATTAACGAATTGAATGATTACTTAAAATCCGTCGAGTTATCTGTAGTTAGTCTAGAATCATACCCAATGACATTGAAAAGGCCTGGTTTGAACACCCATGTTTATTCAATAGATGAGGATCATGTTAGATTTGATTACTAACATTTAAAGTTAACGTTAACTAGGTG
# Right flank :  TTTGAATAGCTTTAAAAGTAATGGTAATAAGTTTTAGCGACACATAGTGTAATATAGATCCACACAAAATGACGTTGGTGATTGATCATCAACGCCATTTTTATTATTCAAAAATTAATGAAACTCAAAAAGAACATCACACCCTACACTATGGTTCAAGCAACTGAACAAATGAGGTATTATGATGCCCTTAAATCTACTTGAAATGGCAGACGAGAATATTGATATTATTGAATACCACGAAAATTCTATTGGTAAATATGATATAAAAGAATACCAAATAAACACAATTAATATCACATTTTGACCTACTCACCAATTAACACTTTTCATAGCTTCAGATTAGTCTAAAATGCTAATAAATTTAATTTATATGCTATGATTATATCATTATGATCAAGGAGGTGAATCTATCCTGATTAAGACCATGCCACAACTTCCCTATTACTATGGAACCAAAGTACGTATTTTTCCATCTAACAGTCAAAAAAGATTAATCA

# Questionable array : NO	 Score: 3.21
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTAGTAGTATGTCATTCTTAGTAGTTTAGAACC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      R [5-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,0.41   Confidence: MEDIUM] 

# Array family : NA
//