Array 1 2069835-2070060 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029705.1 Akkermansia muciniphila strain EB-AMDK-48 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 2069835 31 100.0 33 ............................... TCCGAGCCGGAAGGCGTCTGGTTCGCCCGCCCG 2069899 31 100.0 34 ............................... ACGGAAGGCTACGGGGAATGCAGCGATTACCACG 2069964 31 100.0 35 ............................... CCGCTTGAATTCGTTCAGCGTCTCGTTGATCCGCT 2070030 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 4 31 100.0 34 GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Left flank : TGCCGCCCGCGACCTGGGACACGTCGCCCACGGCATCGACCTTTCCCCGGATAATGTCCGCATTGCCGCGGACCGCCTGGGCGTTCCCGTCCCCTGACCGCGGCCAGCCCGCGGAGGGTTCGCCGGGCTTCCGCGAGACACGCGCGGACCGCTGGCGGGAGTGTCTCACATGGGACAAATGACCCTTACGATTTTTCAAAATTAACCCTTACGGGCATTTATGGGCGTAACTTCTTGCGCCACCCTTCCATTTCTCCCCGGAACGCACGTATTTTCAACCGTTTTCAAGCTTCTTCAAGCGAATTCAACCCTTTTCAAGCATTTATGGTTGGTCACATCACAGAAAATTGCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGGCCGCATCCGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : CATAGGTAAACACATTCTTGTTTTGACTAGCACCAGTGAGGAATGACAGGATAGTTGATATAAGTTGAATCAGGGTTGAAATCCGTTGGAACCCTAGAAGACACGGGAGTTAAGGAGGATCAGACCAGTCATGAGCTATCTTATAAAAGTCGGAGCTGAAAAGAGGGTAAATGACAAGTATCTGATATAAGTACACAGGCTATGCAGGGATGCTGCACAAGAGCTGCAAAGAGTAGGTGATAGAGCAACGACAAGGTAAAAAATCATGATAGGATGCCCCGCATGTGTACACCTACATATTGCATCCCCTTGTACGGCTCCGTTACCGTTATATCCCCAGCAGACCGGAAGAAAAAGAACCCGCAAATTTATCACCTCCATGATACCGCTGTCGTGTTGATGTGGACAACTCGTGAGGGAAGTAAAACGACGTGCTGGGTGAGGGATATGCTCGACAACGTGTGGATTGTGATCAGGGATGAGAGAGAAGATGATTGAAA # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.74,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2103231-2103585 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029705.1 Akkermansia muciniphila strain EB-AMDK-48 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 2103231 31 100.0 34 ............................... ATTCCACAAGCTTTCGCATAATTGTTGAATTCAA 2103296 31 100.0 33 ............................... GCGGGCGCTGGTGGAGGAATTCTTGGAAGCGAA 2103360 31 100.0 34 ............................... TAATGGTTAGAGGTGATGGTTAGGCGGCCGCGAC 2103425 31 100.0 34 ............................... CCGTCAAGGCCCTCCTGACGCGCGAGGCAACCCT 2103490 31 100.0 34 ............................... TTCATTTCCACGCATGCGCGTGAAACACCGTCCA 2103555 31 93.5 0 .............................GT | ========== ====== ====== ====== =============================== ================================== ================== 6 31 98.9 34 GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Left flank : TACGCATTGAGAGGCTGGATAGCCAGACGTCTTTATCGGGAGATGGATTGGAGTCTCCTGGATGACCGCGCCCCGGAAGATTGGACGATTGGACGGGAGGTATTGGCCAGGGTTCCGGCAGCATTGTGCCGCATTGATGAGCCATGGCGTAAACGTTCCCCGTGGAGTATATGGACGGCCTGGTGCTGGCCCAGCCGCACGGTAAGCGCCGAGAGTTACGCGGCCAGGTTTGCCGTGGTGATTACCGGCAGCCCCCGCATGTCCAACCAACCCGCCAGCGAACGGGCCAGAGTGATGCACCTGCTGGCCGACGCCAGGGAGAGGATGCTCCGGGAGGGAGTGGCCAGGGAGGACGACGAGGCAGTGGACTGGGGAGACCTGCTGGCCGCTTGTAAGGGGGAGGCAGAGTCGATGCAGACCCCCTGCACGGAGCAGTCAATTTGACAAGTTATATAAGATACTTGTCGTAGTTCTATCAGATGTCTTGGCGCGTTACACCA # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTGGTATTGGACGAATATGAAAAGATATTATCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCCGCATTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCGCCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGACCTGAAGAATGTATTATTCC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTCACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.20,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.15,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 2677870-2677570 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029705.1 Akkermansia muciniphila strain EB-AMDK-48 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 2677869 33 100.0 33 ................................. TGGAGCTGAAGGTGCTGGGGCGCATCATGACGG 2677803 33 100.0 34 ................................. TTGTATCTGTAACAAAACGGATAATATTTTTTCC 2677736 33 97.0 34 ...A............................. TTTTTGAAGAGTACGCCCTTGTGGGAGATAAAAT 2677669 33 100.0 34 ................................. ATTGGTTCTTTCATTGGTTCTTCTCAAAGGCCTA 2677602 33 93.9 0 ..................G.......C...... | ========== ====== ====== ====== ================================= ================================== ================== 5 33 98.2 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGACAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAACTGCCTCCTGCTCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAGCGAGAGTGACAGCCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTTGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGGGAATAGAAGATTGACAGATAAATACTCAGAAAGAGCAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGCAATGTATAAGGTCGGGCGC # Right flank : ATGACGAGTGCAAGCTTCGAGAAGATGCCTCCCGCCGTACTCTCCAGGGAGTACGTAACTTATCTGGAAAAGAAAAAGCTCTCCAAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCCTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGCGGTTCGGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCC # Questionable array : NO Score: 8.97 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 2687293-2686340 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029705.1 Akkermansia muciniphila strain EB-AMDK-48 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================== ================== 2687292 31 100.0 40 ............................... CGGTTGTGAAAGCACCAGCACGGTTTCATCCTTTTCAAAA 2687221 31 100.0 34 ............................... CGGTTGGAGCGGGTTTGTCCTGCCAGTGGCTTTG 2687156 31 100.0 33 ............................... TGATTGTTCTTCTCGGTTAAAAAAGGCCCCGGC 2687092 31 100.0 33 ............................... TCCATGCTGGAAATGCTTGCGAAACTCTGCCGC 2687028 31 100.0 35 ............................... CGGCTTTATTGCCGCAACGGAGGAAAGCAGGAAAG 2686962 31 100.0 34 ............................... TTCGTGTGTGGCCGCTTCCAGGCGGAAGAGTACA 2686897 31 100.0 36 ............................... GCCCGGTTCGGCGGCTGATGACGCAGGCTCCTAAAT 2686830 31 100.0 39 ............................... GCCTGCTTCCAGTAATCCCGGTTATAGGCGTTCAGATGG 2686760 31 100.0 34 ............................... GCCTGGGTTCCGCTGTTCATGGCTACGCCGACAT 2686695 31 100.0 35 ............................... GTGAGACAGTGGGGGATAAGCTTCATTGTCGAGAG 2686629 31 100.0 33 ............................... GCCTGGGTGTGGCGGGCACGCGCCTGACGGCGG 2686565 31 100.0 34 ............................... GGTTGAGCCCGCGCCTTTCACACACGACTTACGA 2686500 31 100.0 34 ............................... CCGTTTTGCCGGAGTTTTTTGTACTGGTCATGCG 2686435 31 100.0 34 ............................... TCCGCACGCACATGACCACTTTCCGAGAACTCTT 2686370 31 90.3 0 ..........................T.G.T | ========== ====== ====== ====== =============================== ======================================== ================== 15 31 99.4 35 GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Left flank : GCCGTGAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTTTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCGGATATTTTCCGCAGGGCGCTTCGGGACCACTGCTATCCCGGGGCGCCTCTTCTTTTGTGGAAAAGAGAATAAAACGGTTTCCGGGGAGAGGCCTACAAAATTCTGGATGGGAAAGAGGGAACAGGCTAGGATATTTCCGCATCGTGCACAGGCCTTGGTTGCCGGAGATGCAGGCTTTTTAACGCATGAAAAGCTTCTCTCCCGGTCTTCCTTCCGCCGACCCCAAGCTCACAGGAAATTTCTGGAATACCGGCGATTTTCGTAATCCGTTGGGGTTCTGATCTTGACAACTATCATCTCTTTTTAAGGCCTGGAGTCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACGCCCGTTGCACTGTTGATAATCAGTGCCATAGCCGCCCCGGA # Right flank : GTCGTAGATTGAACGGCCTAATATCCCTAGAACGAGAAGGAGCATTTGGCTATAACGCTCATTAAAAACACCCTTCATTTTTAGTGAAGGGTGTTTTGACATTCGTGAAAAGAAACAGCTCAGAAGCCTTCAATCATTTCCGGGGTTAATCCCGGTAGATCATATTTCTTTACAATATTTCCATCCTCGGAGATTTCAATGGAGTGGTGGACTTTCGCAGAAGAGTATTGACCACTTTTACAGTTATGCTCCCACCAAATGACTTTTTGAATAGACATGCTGCCTTCCGGTCGAGCAGAGGAGGCGTCTCCTTCAAACATCTGAGGAAGCACTTGTTTGAAAATGGAGGCATCTTCATCCGAGAAGCCTGTGAGTTCTGCCAGCTGTGGATTGATTGCTCCAAAGAAGACATAGGTTCCCTTGTCCACCCGGTGCTTCATGCCCATGGTGTCGGAAGATTTTTTGCTGCCGTCTCCGTCATTGCTGACACTTTTCGTAAT # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCATGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [53.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //