Array 1 84711-86479 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEM01000012.1 Salinivibrio kushneri strain IB560 scaffold12.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 84711 28 100.0 33 ............................ GTACTCATAAGGATGAAACGAATGATCCGGTTT 84772 28 100.0 32 ............................ CCTAGCACCTTGGCGATGTGGGTAACAGTATA 84832 28 100.0 32 ............................ TAGTGCTGACTTTTGGATGACTTGACCGTCGA 84892 28 100.0 32 ............................ TTATAACTGGCAGCACCTTGCCGCCTCGATGT 84952 28 100.0 32 ............................ TTAGCACCAGCAGCCGGTAGGCCGGTTTTACC 85012 28 100.0 32 ............................ CGTAATGGAATCAAAGCCAGTAGGATTAAACA 85072 28 100.0 32 ............................ TTTTTTCGTTTCAAAGCCATTTGAATAAATAA 85132 28 100.0 32 ............................ TAGTAAACGCGGGCATCGTCCGGTGGGTGGAA 85192 28 100.0 32 ............................ CAGACGGCGAAATATTTACCATTCCCGCTAAT 85252 28 100.0 32 ............................ ACCCGAGAGCTGCCGGGAAACCCCAAAGCCAA 85312 28 100.0 32 ............................ GTAAAAACAATAAATGAGGCGATAGTTCGCTG 85372 28 100.0 32 ............................ CCGAGTCCCAGTCATTGCGGTTGTACCTAACC 85432 28 100.0 32 ............................ GGTGCGGTCGTTAACCCTGCTGGCGACATTAC 85492 28 100.0 32 ............................ ATCCAGCGCTTACGGCCAGAGCAGCAACACGC 85552 28 100.0 32 ............................ ACTTATCCTTATAAGCTGAAAATGTTTGCCCA 85612 28 100.0 32 ............................ TAGCTCGGAGCGAGACCACGCGTCCGTAAATT 85672 28 100.0 32 ............................ TCGCAATTTTCAGATAGCTATTTGATGTGGTA 85732 28 100.0 32 ............................ AACAGCAAGAAAAGCCAGAGTTTTTTGGACAG 85792 28 100.0 32 ............................ GATTACGTGATGGGTACTAACGCGCTACCAAC 85852 28 100.0 32 ............................ AGCTAAAATGGCGATTGTCAAAGCCGGTAAAA 85912 28 100.0 32 ............................ TTGAGAGAAAGACGAGCCTATGAGGGCGCTAT 85972 28 100.0 32 ............................ ATTATCGCCAGCTTGTAATGCTGCCTCGCTAA 86032 28 100.0 32 ............................ AACGATATGAATGAGCTTTCTGACGCGCTGGA 86092 28 100.0 32 ............................ AGCGCTGAGGCGATCACCCACTTGAAACTGAT 86152 28 100.0 32 ............................ GCAATGAATGACAAATACTCGGCCGCCTTTAT 86212 28 100.0 32 ............................ GCAATGAATGACAAATACTCGGCCGCCTTTAT 86272 28 100.0 32 ............................ GTTCAACGCGCTCGGTCATGTCTTTTACGTCA 86332 28 100.0 32 ............................ TGAAAGAACAATATCTAGAGGTGACAGATGAA 86392 28 100.0 32 ............................ GTCGTACGTTTTCATAAACCACGGATCGACAA 86452 28 78.6 0 A..C.................G...GTG | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.3 32 GTTAACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTGTCACTGTTGTCACTTTTTGGCTGATTTAAGTTTGTACTGTGTCTTACAATGGCTACGCATCACGTGCCTCGAACGCAGGGCGGTGTGTTTAGTTTTGCGCCCGCGAGTCCGTTCACGCCATACTTTGAAGCTCCGCGGTTTTAATTCACGTCGCATTAACGCAATCACATCGTCTTGGCGTAGGCCATAGAGTGCTTCAATCGCCTCAAACGGGGTTCTATCTTCCCACGCCATTTCTATAATTCGGTCAATCTCTCCCGGTTGTTCGTTCAATGCCATGTCGGTCTCCTTGTGCTGGTGGCCAATAGTACGCGTAGAGTCGGAAAAACCGATCAGCGTGTTCCTTCTAACCCATCAATGCTGTTACCCTTGTTTTTGGCATCTTTAAAAATAAACAGAAAATACAGTTAGTTACAGCAGGCCATTTTTAACAAGGGTAAAAGACGATTTTTATCCTAACGGCCTGTTGTCACTGACAATTATTACGTTATTCTATT # Right flank : ACACAAGCCCCAGCACGATGTTGGATAGGGGGACATTGCCAACGGGCGCCTGTCACGATCAGGGGTTAATAGTTGGCWCCGATGTCGGATGGCGCGCGGCGAAAGTCATACCAAGTTTGCACGATCGAGTTGGCGCTTATGCCGACCTACGCGAACTTTAACGTCGGTGGTGCCATTGGCGACCGAGACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCAACGGGCGTCTGTCACGATCGAGGTTAATCGTTGGCTTCAATGTCGGAGGCGCCAGTTGCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTAACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 995-1741 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEM01000011.1 Salinivibrio kushneri strain IB560 scaffold11.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================================================================================================================== ================== 995 28 100.0 32 ............................ ATACAAAAATCATACCAGCCCTACCGGATATA 1055 28 100.0 32 ............................ GCCAAGTGATAATAATCACACGGAAAATTATA 1115 28 100.0 32 ............................ AGAATACCAAGTGACTGACGCCGATTTGTCGG 1175 28 96.4 32 .............T.............. TCCCTATTTTGGAGAATCGCACACGCTCTTTA 1235 28 96.4 32 .............T.............. GCTTGGTCAGGACGTCGATACCGACTCACTCC 1295 28 96.4 32 .............T.............. ACGCCTCCGCACTTCGCGCGTCAGCATGGCAA 1355 28 100.0 31 ............................ AATCCAGACACGCTTAAACGTGACCTGTATT 1415 28 100.0 32 ............................ TTCGCCGATTGGCGTAATCGTGACTTCTTGAG 1475 28 96.4 32 .............T.............. GCTGATACAATTGCAATATTTCGTAGTTTCAT 1535 28 82.1 150 .............T.......G...GTG ACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGAGGCGCCAGTTGCACTGCGCGCGGTGCAAATCACACCAAGCTTGTATGATCGAGTTGGCGCTT 1713 28 85.7 0 ..C...CTA................... | G [1717] ========== ====== ====== ====== ============================ ====================================================================================================================================================== ================== 11 28 95.8 44 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CGTGATCCGCAATACTTACACACACCACAAATTCGTACGGATTAGCACCGCTTTATGATGTGGTCTTTACGCAGCCTTATATTGAATATGACAACATTGCGTTGAAAATGGCGAAAAGTAAGCGTTGGTATGATATTGGTTTGAGTCACTTCGAACTTTGGTCGCAAGATGTAGGTGTGCCGTGGCAAATGATAAAACCGCATCTGTTGGATACGATCAACTTGGCGAGAGATATCTGGCCAAATCAACTTGCGCAATTACCGATGTTAACGGAGCACAAAGCGATGCTACGTGATCATTGGAAAGCCCTGCACAAGGACTTTATCATCGATTCGTAACCCCACGGAGAACTAAGCCGGCATCTTCTTACCCTTATTTTTTGGCTATTTAAAAATAAACAATAAATACAAAGCGTTACGGAAAGCGATTTTTAACAAGGCTAAAAGACGATTTTTATCCTAACGGCCTGTTGTCACTGACGATTATTACGTTATTCTATT # Right flank : AAAGCTTTGCAGGTGTTCCGCTGCTTTGAGCTTTCCTCCTTACCTCTATTTCTCTTACTGTTGATGCCTGTCTGGGTTTTTCATAGAAATGACTAATTTTAAATACCTCTAGGTGATTAAGCTTTATGCCCTGACTTTAATCGTTGAGTATTTTCTATCTATCAATCAAAAACTAATCGACGGGGAGACTACTCCTATCTAGTTCTTTTTAACCGGTGGCGAGAATCTATTCTACGATAAGAAGGTAGCGATTTTTGGTCGATGTTGTCTGTTGTTGACTGGCAGGAGTTGGGTATGAATATCAATAACACCATGAAGTTAGTGTTTTTTATAATTGGGGCAGGGATTGTCGTTAGTTTTATAACGATTATTCAACTCAACGGCCTAATGAATAAAGTCGATGAGATGGCTCAGGTGCGATATGAATCGTATCAAACGGCTGATGAATTAAGGCAAAGCTCTGATGACTTGACCCGCTTAGGAAGAACCTATGTGGTGAC # Questionable array : NO Score: 4.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-1.12, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10134-10641 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEM01000042.1 Salinivibrio kushneri strain IB560 scaffold42.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10134 28 100.0 32 ............................ GTCTTCGATGTATCGGTGCTTGTCTGGCTCAT 10194 28 100.0 32 ............................ ACATTAAGTTGATTGAGCTCGATGAAGACGTT 10254 28 100.0 32 ............................ TCGTTGTTAGTCCCTGTTGCGCCCTGAAAATA 10314 28 100.0 32 ............................ GTTTCTATGGGTTGGGGGTGCGGCGCTAGGCG 10374 28 100.0 32 ............................ ACTTGTCGATCCCGGGGACTTCAATCCAGCTA 10434 28 100.0 32 ............................ GCCAGTTGTCGGATTTGCTCCGCTATCACTTT 10494 28 100.0 32 ............................ GCTATATGATGTATGCCTTGTAACATTACTTA 10554 28 100.0 32 ............................ ATATCAAGCAGTGCGACTTGGCTTCTGAGATG 10614 28 85.7 0 .....................G...GTG | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGCAAGACTATGCCTACTTTAAACGTTGGAACTACAAATCGCCGCAGCGACTGTATAAAAACCTCGATCGGCGCGCGGCCGCGATTGCCAGCAAAAATGGTTACGGTGAGGCGGAAGTAAAGCGTCGTTTGTTGGAAAACATTAAAACGGACGACAAACGCTGGTCGCTGCCTTTTATTCAAGTCACCAGCCTGTCGAGCCAAAAACGAGCGGGGCAGCCAAATACCGAGTTCGCCCTGTATATCGAGCGGGAACTGACCAAACAGCCGCCAAGCAACGGCCAACCGTTCACTTGTTATGGGCTCAGCCGACGCGAACCCGATCAGCAATCTGCGGTACCGTGTTTTTGAGGGGGAAACCCCTCTTTACCCCTTCTTTTTGGGCTCTTTAAAAATAGACAGGAAATACAGTTAGTTACGGCAGGCCATTTTTAACAAGGGTAAAAGGCCATTTTTATCCTAACGGCCTGTTGTTACTGACGATTGTTAGGTTATTCTATT # Right flank : GACACAAGCCCCAGCACGATGTTGGATAGGGGGACATTGCCAACGGGCGCCTGTCACGATCAGGGGTTAATAGTTGGCTCCGATGTCGGATGGCGCGCGGCGAAAGTCATACCAAGTTTGCACGATCGAGTTGGCGCTTATGCCGACCTACGCGAACTTTAACGTCGGTGGTTGCCAACGGGCGCCTGTCACGATCAGGGGTTAATAGTTGGCTCCGATGTCGGATGGCGCGCGGCGAAAGTCATACCAAGTTTGCACGATCGAGTTGGCGCTTATGCCGACCTACGCGAACTTTAACGTCGGTGGTGCCATTGGCGACCGAGACACAAGCCCCAGCACGGTGTTGGATAGATGCACATTGCCAACGGGCGTCTGTCACGATCGAGGTTAATCGTTGGCTTCAATGTCGGAGGCGCCAGTTGCACTGCGCGCGGTGCAAATCACACCAAGCTTGTACGATCGAGTTAGCGCTTGTCCGACCTACGCATAGGCAGCTTAGA # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //