Array 1 770962-770334 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042220.2 Dickeya poaceiphila strain NCPPB 569 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 770961 28 100.0 32 ............................ GAGAAGCGTGCCGGAAATCTTGCGACGCACTT 770901 28 100.0 32 ............................ AGTATACCGTACGGTGCAAACCTCACGTTTTC 770841 28 100.0 32 ............................ GGGTGAAGTTACCCCCGCTGACATAGTGCGAT 770781 28 100.0 32 ............................ TTCCCCTGCTGCGCTTTAGCTTCAGGAAAGGT 770721 28 100.0 32 ............................ AAACTGTCTCAAATCCCGTGGGATAAGTTGAT 770661 28 100.0 32 ............................ TGTCACTCTCTCTCAACGGGCGAGCCTCGCAG 770601 28 100.0 32 ............................ GCCTCTCCACTCGTTGCACAGCCGATGCATCC 770541 28 100.0 32 ............................ GACAGCAAAGATGATGACAGCCTGCTTTAACC 770481 28 100.0 32 ............................ CAGCCGGAAATAACTGGATAACGCCGAGCGAG 770421 28 100.0 32 ............................ TGTTCGCGGTAGTCAACCGGCGCAGCCAGATC 770361 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 11 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GTCACCGAGGTACCGGTGCCGAGCATCACCACGCTGGTATTGGCAATCGGGATATTCCAGTACAACGACTGATTCCCTTCTTCGGTGACATATTCCACCCGCCCACCATTGACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACGGTTTCTCTGTCGTAGTGATAAAGCAGCACCACCCGCGTAATAAAACGCAGGCTAATAATTAATTGGAAAACACGTAATGCACTGGAAAGTAACGAGAATTAGCCTAGCACAGCCAAAACGAGAAAGTGAATGACGGCCAAAATACTTTTCGTATTTTCATACCCTTTTTTTCAGGCGTCTTTTTCGATATTGAAAAATCAACAAGTTACCGACAACCGAAAAAAAAGGGTCTGAGGGCAAAAATCGCCAATTGCGAGTCAGAATACAAAGAGTTAGAGTCAACGGGCTACA # Right flank : ACAGTTCTGGCGATTAAGGGGATTAAATTAGATTTTCACTGCCGTACAAGCGGTGGTTGACGGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCATGGATGCCGCGAAAGCCTGTGCCGCTCCGGGAGAGCGTCACAGGCGGTCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGTTAGCGGCGTAGTTTAGCCACCCAGCCAGAGGTCAAGGAGAGGTGGCGATTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACTCTTCACGCTTTCAGGCACGCCTTCGGTGTCGGCGTGATGCGGTTAATCACGCACGAAACCCTTCACCACACTACCCTATACACTACGCCCTTAATCCAACAGCGCTTTCCCCGCTTCAGGGATATTCTGTCAGAACGATGTCCAATCATCATGGCTGGAGGCAGTAGCGGCGGCACGTTTTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 779555-780063 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042220.2 Dickeya poaceiphila strain NCPPB 569 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 779555 28 100.0 32 ............................ AGTTGGCATCGAATTCAAAAGAGCGATTGATT 779615 28 100.0 32 ............................ AGCAAAGCAGCGCTCACCGCATCGGACAAGAT 779675 28 100.0 32 ............................ TCGCTGAGGCAAAATTGAAGGCGTCGCAGATC 779735 28 100.0 32 ............................ AGTTGGCATCGAATTCAAAAGAGCGATTGATT 779795 28 100.0 32 ............................ ACTCTCGCACGTTGATTGTGTCTATTGGGTGG 779855 28 100.0 32 ............................ AGCAAAGCAGCGCTCACCGCATCGGACAAGAT 779915 28 100.0 32 ............................ AAAAATCAATCGTTTTGGCGCGTAGCTTCGCC 779975 28 100.0 32 ............................ ATCATTAAAGCGGCTCTGTTCCGGCCCTTTGG 780035 27 82.1 0 ...........T........G..-..CG | AG [780053] ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCACTGGAACAAACCGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCAATGTATTACCGGTGCCAACTGGTGCGCAGTACCGCACCGTGCGGCGGGTGCAGGTGAAAAGCAACGCCGAGCGCCTGCGCCGCCGGGCGGTGAGCAAAGGCCGGATGACTGCGGACGAAGCCGCCACCCGCATTCCCTACGCGGTGGAAAAACGCACCTCGCTGCCGTATCTGCCGCTGCGTAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGCTGCAGGACAAACCGGTCGCCGGTACCTTCTCCAGCTACGGCTTAAGCGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTGTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAGGGTTTTCCCGGAAAAACGGCGGTTTTTCTTTAACAATCAGGCAATAAGCAATTATTTGCTACA # Right flank : GGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAAGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACGGTTTATCCCGCACGAAACCATCCACCGCCCTTGCATACATTCGACAGGCATATTCGCCAGCAACCCCCGCTGTTTGCCAACAGCCCATCCCCGGCGGGCATAGCCGTTTCCTGCAAGGAAAAAAATCCCCCAACCGTTACCGGCTGGAGGAAAAGGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCAGCGAAAGCCGCCGCCACGCGCTGTACGTTGTGATGATTTAACCCGGCGATGCAGATACGGCCACTGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 783620-783411 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042220.2 Dickeya poaceiphila strain NCPPB 569 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 783619 28 100.0 32 ............................ GTAGGCCATCAGGTCAGTTGGCTTCACGGTCG 783559 28 100.0 33 ............................ CAACACCGGGGTGCGAATATACAGACATTGTTT 783498 28 100.0 32 ............................ GCCATCGCGGATCTGACTTCTCTGTCTAAATC 783438 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTGAACTGCCGCGTAGGCAGCTTAGAAA # Left flank : GTGACGGAAATCCCGCCCATGGCGATATCGCACTGACCGGACTGAAAATCTGGCATCAGGGTTTTCCAGCTGGTTTTCACCCATTCCACCTTCACGCCCAGGCTTTTCGCCAGCGACTGTGCCATGGCGATATCGATGCCTTCGTAACTGCCATCCGCACGTAGCGAGGTATACGGCTTATAGTCCCCGGTGGTACAGACCTTCAGCACCCTGTGTTCCTGAACCTGATCAAGATGAGACGCCGCGCTGGCGCTACCGGCCAGCCCCAACAACAGAATCAGTGAAAACCGTTTTTTCATGAAAGTTCCTTGCAAAGCTGTCTGACAAACGCGCCACTGTAACATGCCGTTTCAGCGAGTGTCGGTTTTGACCCTTTTTTTTCGACTACGTATAACTTGTTGATTTTTAATCATGATAATCGCAGGTATAAAAAAAGGGTTTCACAGCCCAAAACACAATTTTCCCTTTCAACATCAAGCCATAAGCGATAAATTGCTACA # Right flank : AGACAAGCGGCGCATCAGATATCGTCACACACGCAGCAATTATCAGGCCAACCCCAACACCATTTACCAGCAGGGCGTGTTTAAGGTACTTAACAAACTGAATCAGCTAAAAAAAATCCTCAACCTCACGTTTATTGCAGCAATGCGATTATCACGTTGATTTAGTGTGTAAATAGTTCAAAATCTGCACACAACCGACATATTGACGGGTCGCTATGCACTACCATGAACCAGAACAGTGCTGCCGGGCAGCAGAAAAAACACGCTGACCCCATCAGGATGCCAAACAACAAACTTTCGGAAGCCAAAAAAGCTGCTAGTCTGTAGCTTTTGTATTTCTGGGAAAGCAGGGCTATGTACAACATTGATGATTTTGACTTGAAGATCCTCACACTGCTGCAGGCAAATGGACGCCTGACTAATCAGGAGCTCAGCGATCTGGTGGGGCTATCGGCCTCACAGTGTTCTCGTCGTCGCATTGCCCTCGAACAGGCACAACT # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGCGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGAACTGCCGCATAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3677490-3677156 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042220.2 Dickeya poaceiphila strain NCPPB 569 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3677489 29 100.0 32 ............................. GTGGCGCGCCAGGTGGTGACGGTTGAGGTGAT 3677428 29 100.0 32 ............................. AAGCCGGGGCTTCTGCCCCTAATTAACGGGGT 3677367 29 100.0 32 ............................. CCACCGCATTGTTTGCTGCTCCGGATGCATCA 3677306 29 100.0 32 ............................. GCTGGCCTGTATTCACCTTCTTGATCATGTGC 3677245 29 100.0 32 ............................. GAGCTGAATCCGGTACAAAAATCGGCCATCGC 3677184 29 82.8 0 ............T............GTGC | ========== ====== ====== ====== ============================= ================================ ================== 6 29 97.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAGCACGGCAAAAAGTCGGCAAGTGTTGAAGGCTGGTGTTGCACCAGCCTTTCTTTTTGCATTTTGCTCAACTGCTTGACGCGGTATTCCCATTTCAACGCGGTGGAACGATCACCCGCGACACAGTGATACACCAGCGTCAGCGGCCCTTTGCCGCGCAATGCACGAGCGCCTTTCCCGCTTTGGTGCTGCGCCAGTCGTCGCGCCACATCGGTAGTGATGCCGGTATAAAGCCACCCACTGCCGGTACGCAGCAGGTACAGGAACCATATTGCTCCGGTGTCGTTCACCGTTTTTTCCCTCTGTATGATCGAAGTACTTATTTTACGGGGTTATGTCGGTGAAGGCAGCACGTAGCGGCGATACGGGTTGGTGGGGAACGGTGGAAAAAATCGGGATCTTGATTTATCAATAAGTTAGCGCTCTTTAACAACCAGAAAAAGTCGGTGGAATTTTTTAGCCTTTAAAAATCATTATAAAACAAGTATATAATTTTAGA # Right flank : GGGTGTGATATACCGGTATAATCTGGGGCGGTTCCTTGGGTTGAATTGTGATAATATTCACACATGTCTTGATTTATGTGTATGTAATTTCTTTTTTGTGTGAATAAAACCACAAAACAGGCTGAGGTCTCCGGGTGAAATAGCGGTATATGCCAGAGAGACAGCCATGTGGCTAAATAACGGAGCATTGTATGACTGAGTTGACTGTGGCGGCGCAACGTGCGCTGGGGCTGATGGATTTAACCACCCTGAATGATGACGATACCGATGAAAAGGTGATCGCGCTATGCCGTCAGGCTAATAGCCCGGCGGGAAAAACCGCCGCCATTTGTATCTATCCGCGTTTTGTGCCGCTGGCGCGCAAGGTACTGCGCGAGCAGGGTACGCCGGATGTCCGCATTGCTACCGTGACCAATTTCCCGCACGGCAATGACGACATTGATATCGCGCTGGCGGAAACCAACGCAGCTATCGCCTATGGCGCCGACGAGGTGGACGTG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 3977445-3976989 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP042220.2 Dickeya poaceiphila strain NCPPB 569 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3977444 29 100.0 32 ............................. GGGGAATCCGGCGAACGTTACACCATGCTGGA 3977383 29 100.0 32 ............................. CAATAGTTTACTTTCACAGGCAAACAAAAGCA 3977322 29 100.0 32 ............................. GACGTTTTCATAGACTTAACGATGTGGCGTGA 3977261 29 100.0 32 ............................. AGATACGCACAAGGAAATCAAGGTGTATGTGC 3977200 29 96.6 32 .............T............... CTATCGCAGCACGAAAAGAGGACCGCAGAAAG 3977139 29 100.0 32 ............................. AATCTAACAACGCGTTTCGCGTTCGCCGTAAC 3977078 29 96.6 32 ...........A................. TAGACGTAATCACCAACGTGGCTGGACTGCCA 3977017 29 93.1 0 ...........................GC | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTGATTGAAGACGTGCTGGCTGCCGGCGAAATTGAGCCGCCACAGGCACCGCCAGATGCACAACCGCCGGCCATTCCCGAACCGACACCCTTTGGCGACGCCGGGCATCGGGGGCATGGCGGATGAGTATGCTGGTGGTGGTGACGGAAAACGTGCCGCCGCGCTTGCGCGGTCGGCTGGCGGTCTGGTTGCTGGAGGTGCGCGCCGGGGTGTACGTGGGCGACACCTCGCGCCGGGTACGGGAAATGATCTGGCAACAGGTGGTGGAACTGGCTGAACAAGGCAATGTGGTAATGGCCTGGGCCACTAACACTGAGTCCGGTTTTGAGTTCCAGACGGTCGGTGAAAATCGCCGGATGCCGGTGGATCTCGATGGACTGCGGTTAGTCTCTTTTCACCCTGTTGAAAATCAGTGAGTTAGTGTTCTTTAACAACCGGGAAAAATCGGTGGAATTTTCCTGCCTTTAAAATACCTTATAAAACAGGTATATATTTTTAGA # Right flank : TTTATCAAAAAGGGACTGCTGAAGCGCCAGAGGCACCCTTTGGGGAAGGGTGCCTCTGGTTTGTTGTTGACGGCAAACGGCGTTAAAAACGCTGCTTAAAAGGAATGCCAGTCATCCTCGCTGCCTGCCGTTTTGCGTGATGACGCCGCCGGTTTTAAGGCCAGCGTTTTGGCTGGAGCAGGGGAGGCTGAAAGCATTGGTCTGCTGCTGGGTTGGTGATAAGCGTCAGCCCTTGTGCCGCCCAAATGGAAGATACTAACCACCTGTTTTAACTGCTCTGCCTGCTGCTGCAAGGCTTGTGTCGCGTTATTGCCTTCTCTCACCAGTGAGGCGTTTTGCAATGTGGTCTGTTCCATCTTATTGATGGCCATATTCACCTGTTCGATGCCAAGTGACTGCTCCTGGCTGGCGATGCTGATTTCACCTACCAGTTCGCTCACTTTGCGCACCCCATCCACAATCCCCTGAATGGATGCACCGGCTTTTTCCACCAGTCGGTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //